BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2573677 =	160 (0.840)	19 (0.120)	11/138	NT	13.1%	intergenic (‑203/+91)	norB_5/opuCD	Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD
*	?	USA300TCH1516_ALE	2573715 =	115 (0.700)	19 (0.120)	11/138	NT	13.1%	intergenic (‑241/+53)	norB_5/opuCD	Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD

Only 100 of 217 total aligned reads displayed.

ATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA  >  USA300TCH1516_ALE/2573625‑2573804

aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc                                                                                           >  2:245916/1‑91 (MQ=255)

aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc                                                                                           <  1:2276879/91‑1 (MQ=255)

aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc                                                                                           >  2:3185013/1‑91 (MQ=255)

      agatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttttt                                                                                     >  1:2800506‑M1/47‑91 (MQ=255)

       taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAATAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt                                                                                    <  2:2726003/91‑1 (MQ=255)

       taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt                                                                                    <  1:2096777/91‑1 (MQ=255)

        aatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTta                                                                                   >  2:1450353/1‑91 (MQ=255)

        aatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTta                                                                                   >  1:3209774/1‑91 (MQ=255)

         atTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtat                                                                                  >  1:3822865/1‑91 (MQ=255)

          ttGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtata                                                                                 >  1:684408/1‑91 (MQ=255)

          ttGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtata                                                                                 <  1:55241/91‑1 (MQ=255)

           tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTGGCCTCATTTTTTATaa                                                                                <  2:389300/91‑1 (MQ=255)

            gCTGTTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa                                                                               <  1:3497319/91‑1 (MQ=255)

              tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc                                                                             >  1:3444291/1‑91 (MQ=255)

              tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc                                                                             >  1:2064349/1‑91 (MQ=255)

              tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc                                                                             <  2:2324142/91‑1 (MQ=255)

                 tttAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATg                                                                          >  1:1316365/1‑91 (MQ=255)

                   tAGTGTAAACGCATACAAACACATCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGaa                                                                        <  2:2621589/91‑1 (MQ=255)

                    aGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGaaa                                                                       <  1:1626354/91‑1 (MQ=255)

                     gtgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAAc                                                                      >  1:366122/1‑91 (MQ=255)

                     gtgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAAc                                                                      <  1:727862/91‑1 (MQ=255)

                         aaaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGTAACGaaa                                                                  >  1:1079028/1‑91 (MQ=255)

                          aaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAAt                                                                 <  2:2281990/91‑1 (MQ=255)

                          aaCGCATACAAACACAACCTATAAAAAAGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAAt                                                                 <  2:173552/91‑1 (MQ=255)

                            cGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCg                                                               >  2:810555/1‑91 (MQ=255)

                                 aCAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTaaa                                                          >  1:511105/1‑91 (MQ=255)

                                 aCAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTaaa                                                          >  2:1889791/1‑91 (MQ=255)

                                  cAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAAt                                                         >  2:2494799/1‑91 (MQ=255)

                                   aaaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAAtt                                                        <  1:1881807/91‑1 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                     <  1:119988/91‑1 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                     >  2:518648/1‑91 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                     >  1:1772572/1‑91 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                     <  2:2801081/91‑1 (MQ=255)

                                        caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATaaa                                                   >  2:3065828/1‑91 (MQ=255)

                                        caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATaaa                                                   >  1:1600225/1‑91 (MQ=255)

                                         aaCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAAc                                                  <  1:297726/91‑1 (MQ=255)

                                         aaCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAAc                                                  <  2:1364501/91‑1 (MQ=255)

                                          aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa                                                 >  1:2983495/1‑91 (MQ=255)

                                           ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt                                                >  1:2471518/1‑91 (MQ=255)

                                           ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt                                                <  2:3645865/91‑1 (MQ=255)

                                             tataAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtct                                              >  2:2455738/1‑91 (MQ=255)

                                             aaaaaatgaggctactcaaggagctcaaataatctttgagtagcc‑‑‑TTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtcttct                                           >  2:1563996‑M2/46‑91 (MQ=255)

                                               taAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtcttc                                            <  1:3660422/91‑1 (MQ=255)

                                                aaatAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtcttct                                           >  1:1626072‑M1/5‑91 (MQ=255)

                                                 aaaaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTcta                                          >  2:2988016/1‑91 (MQ=255)

                                                   aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact                                        >  1:86908/1‑91 (MQ=255)

                                                   aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact                                        <  2:921604/91‑1 (MQ=255)

                                                    aggctactcaaggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctacta                                       >  1:3343349‑M2/39‑91 (MQ=255)

                                                      GCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAtt                                     <  2:2857061‑M1/91‑1 (MQ=255)

                                                        TACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTAc                                   >  1:795186‑M1/1‑91 (MQ=255)

                                                         ACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACa                                  <  2:1507671‑M1/91‑1 (MQ=255)

                                                          CTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACat                                 <  2:312639‑M1/91‑1 (MQ=255)

                                                          CTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAATACat                                 <  2:3144241‑M1/91‑1 (MQ=255)

                                                           TCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACata                                <  2:403657‑M1/91‑1 (MQ=255)

                                                           TCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACata                                <  2:2517627‑M1/91‑1 (MQ=255)

                                                            caaggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                               >  1:2824199‑M2/31‑91 (MQ=255)

                                                            CAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                               <  2:3594068‑M1/91‑1 (MQ=255)

                                                            CAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                               <  2:1581054‑M1/91‑1 (MQ=255)

                                                             aaggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAtt                              >  2:671740‑M2/30‑91 (MQ=255)

                                                              aggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTa                             >  2:3098289‑M2/29‑91 (MQ=255)

                                                              AAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTa                             <  1:1360678‑M1/91‑1 (MQ=255)

                                                              AAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTa                             <  1:238134‑M1/91‑1 (MQ=255)

                                                               ggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTaa                            >  1:1100122‑M2/28‑91 (MQ=255)

                                                               ggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTaa                            >  2:2158208‑M2/28‑91 (MQ=255)

                                                               aGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAAc                                                  <  2:107129/69‑1 (MQ=255)

                                                               aGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAAc                                                  >  1:107129/1‑69 (MQ=255)

                                                               aGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTaa                            <  1:3771364/91‑1 (MQ=255)

                                                                gATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAAt                           >  2:1459051/1‑91 (MQ=255)

                                                                  ttattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATAc                         <  1:2416952/91‑1 (MQ=255)

                                                                  ttattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATAc                         <  2:1770175/91‑1 (MQ=255)

                                                                  ttattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATAc                         >  1:1406687/1‑91 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                       >  1:3198956/1‑91 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                       <  2:3352262/91‑1 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                       >  1:641548/1‑91 (MQ=255)

                                                                       tGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGc                    <  1:1959707/91‑1 (MQ=255)

                                                                       tGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGc                    >  2:357032/1‑91 (MQ=255)

                                                                       tGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGc                    <  1:3705724/91‑1 (MQ=255)

                                                                        gAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCg                   >  1:2604702/1‑91 (MQ=255)

                                                                            tCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCg               >  1:2534041/1‑91 (MQ=255)

                                                                            tCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCg               <  1:2814388/91‑1 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtct                                              >  1:3128867/1‑58 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgat             >  1:600478/1‑91 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgat             >  1:402418/1‑91 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgat             <  2:1819509/91‑1 (MQ=255)

                                                                               ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatg            >  2:1517909‑M2/12‑91 (MQ=255)

                                                                                tgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatga           >  1:1927720‑M2/11‑91 (MQ=255)

                                                                                 gagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat          <  2:2852529‑M2/82‑1 (MQ=255)

                                                                                 gagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat          <  2:3494911‑M2/82‑1 (MQ=255)

                                                                                 gagtagcctCACTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat          <  1:3523054‑M2/82‑1 (MQ=255)

                                                                                   gtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTa        <  2:5547‑M2/84‑1 (MQ=255)

                                                                                    tagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAg       >  2:207628‑M2/7‑91 (MQ=255)

                                                                                    tagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAg       >  2:3793426‑M2/7‑91 (MQ=255)

                                                                                     agcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTTCGGCCGATGATTAGa      >  2:1261354‑M2/6‑91 (MQ=255)

                                                                                     agcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGa      <  2:2529834‑M2/86‑1 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt     >  1:3760916‑M2/5‑91 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt     <  2:1316365‑M2/87‑1 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt     <  1:2365587‑M2/87‑1 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt     <  1:432094‑M2/87‑1 (MQ=255)

                                                                                       cctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt    >  2:2259320‑M2/4‑91 (MQ=255)

                                                                                       cctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt    <  1:1394054‑M2/88‑1 (MQ=255)

ATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA  >  USA300TCH1516_ALE/2573625‑2573804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.