| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2573677 = | 160 (0.840) | 19 (0.120) | 11/138 | NT | 13.1% | intergenic (‑203/+91) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD |
| ? | USA300TCH1516_ALE | 2573715 = | 115 (0.700) | intergenic (‑241/+53) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD | |||||
Only 100 of 230 total aligned reads displayed.
TTTTTACAATAATTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > USA300TCH1516_ALE/2573587‑2573767 | tcaatctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatga < 2:3758308‑M1/1‑1 (MQ=255) ttttACAATAATTAACGCTTTTTATCCAAAGACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAg < 2:2139301/91‑1 (MQ=255) aatctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAgg > 2:2259360‑M1/89‑91 (MQ=255) aatctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAgg > 2:3181935‑M1/89‑91 (MQ=255) aatctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAgg < 1:1394346‑M1/3‑1 (MQ=255) atctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGc < 1:2365587‑M1/4‑1 (MQ=255) atctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGc < 1:432094‑M1/4‑1 (MQ=255) atctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGc < 2:1316365‑M1/4‑1 (MQ=255) atctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGc > 2:1448826‑M1/88‑91 (MQ=255) tctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCt < 2:2529834‑M1/5‑1 (MQ=255) tctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCt > 2:1261753‑M1/87‑91 (MQ=255) ctaatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTa > 2:2776951‑M1/86‑91 (MQ=255) taatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTAc > 2:423925‑M1/85‑91 (MQ=255) taatcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTAc < 2:5547‑M1/7‑1 (MQ=255) cAATAATTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTAc > 1:2587797/1‑91 (MQ=255) atcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTc > 2:1577235‑M1/83‑91 (MQ=255) atcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTc < 2:1746270‑M1/9‑1 (MQ=255) atcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTc < 2:2852529‑M1/9‑1 (MQ=255) tcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCa > 1:1927720‑M1/82‑91 (MQ=255) tcatcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCa > 1:1077368‑M1/82‑91 (MQ=255) taatTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCa < 1:2461456/91‑1 (MQ=255) taatTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCa > 2:88501/1‑91 (MQ=255) taatTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCa < 1:489146/91‑1 (MQ=255) catcggccgcaaagtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCaa > 2:1517909‑M1/81‑91 (MQ=255) aatTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCaa < 1:1048259/91‑1 (MQ=255) aatTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCaa < 2:3427249/91‑1 (MQ=255) atTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCaaa > 2:119988/1‑91 (MQ=255) ttAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAg > 1:2060058/1‑91 (MQ=255) tAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGa > 1:3532145/1‑91 (MQ=255) tAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGa < 2:1335892/91‑1 (MQ=255) aaCGCTTTTTATCCAAACACATTCATGATCATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATCAAAAGGCTACTCAAAGat < 1:839550/91‑1 (MQ=255) aaCGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGat > 2:767807/1‑91 (MQ=255) aCGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGatt < 1:25154/91‑1 (MQ=255) aCGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGatt > 1:2176484/1‑91 (MQ=255) cGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGatta < 1:624327/91‑1 (MQ=255) cGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGatta > 2:2418448/1‑91 (MQ=255) cGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGatta > 2:605250/1‑91 (MQ=255) gCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGattat < 1:1000549/91‑1 (MQ=255) tttttATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTAttt < 2:3532145/91‑1 (MQ=255) tttttATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTAttt < 2:813669/91‑1 (MQ=255) tttttATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTAttt < 1:1161986/91‑1 (MQ=255) tttttATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTAttt < 2:207799/91‑1 (MQ=255) tttttATCCAAAAACTTTCATGATAATAATTGCTATTTCAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTAttt < 2:207033/91‑1 (MQ=255) ttttATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTg < 2:1804340/91‑1 (MQ=255) tttATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGa < 2:1068005/91‑1 (MQ=255) tttATCCAAAAACTTTCATGATAAGAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGa < 2:2660481/91‑1 (MQ=255) gtattaatatgtaatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGc > 2:2242847‑M1/68‑91 (MQ=255) aTCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCt < 1:3588981/91‑1 (MQ=255) cAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCt < 1:2095457/91‑1 (MQ=255) aaCTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAg > 1:507354/1‑91 (MQ=255) taatagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAg > 1:1607076‑M1/57‑91 (MQ=255) tCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGcc > 1:3263078/1‑91 (MQ=255) tCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGcc > 2:110993/1‑91 (MQ=255) tagtagaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCt > 1:1312473‑M1/54‑91 (MQ=255) cATGCTAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTACCCt > 1:3062253/1‑91 (MQ=255) cATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCt < 1:3664009/91‑1 (MQ=255) cATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCt > 2:694146/1‑91 (MQ=255) aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc < 1:2276879/91‑1 (MQ=255) aTGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTc > 2:3185013/1‑91 (MQ=255) taataaTTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttt < 2:1953663/91‑1 (MQ=255) ataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttttt > 1:2533764/1‑91 (MQ=255) agatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttttt > 1:2800506‑M1/47‑91 (MQ=255) taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt > 2:1468748/1‑91 (MQ=255) atTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtat > 1:3822865/1‑91 (MQ=255) tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTGGCCTCATTTTTTATaa < 2:389300/91‑1 (MQ=255) gCTGTTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa < 1:3497464/91‑1 (MQ=255) cTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAAt > 2:3072299/1‑91 (MQ=255) tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc > 1:3444531/1‑91 (MQ=255) tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc < 2:2324142/91‑1 (MQ=255) tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc > 2:2513526/1‑91 (MQ=255) ttttAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCAt > 1:642231/1‑91 (MQ=255) tAGTGTAAACGCATACAAACACATCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGaa < 2:2621589/91‑1 (MQ=255) aGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGaaa < 1:1626337/91‑1 (MQ=255) gtgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAAc < 1:727862/91‑1 (MQ=255) gtgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATGTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAAc < 1:3368890/91‑1 (MQ=255) aaaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGaaa > 2:1140630/1‑91 (MQ=255) aaaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGaaa > 1:1093733/1‑91 (MQ=255) aaaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGaaa < 1:679058/91‑1 (MQ=255) aaCGCATACAAACACAACCTATAAAAAAGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAAt < 2:173552/91‑1 (MQ=255) aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa < 1:1351864/91‑1 (MQ=255) aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa > 1:531111/1‑91 (MQ=255) aaaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAAtt < 1:1881807/91‑1 (MQ=255) cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata > 2:518648/1‑91 (MQ=255) cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata > 1:1772572/1‑91 (MQ=255) cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata < 2:2707224/91‑1 (MQ=255) caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATaaa > 2:3065828/1‑91 (MQ=255) caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATaaa > 1:3201275/1‑91 (MQ=255) aaCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAAc < 1:297726/91‑1 (MQ=255) aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa > 1:2983495/1‑91 (MQ=255) aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa > 1:3762707/1‑91 (MQ=255) ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt < 2:3645661/91‑1 (MQ=255) ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt > 1:3758308/1‑91 (MQ=255) cTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtc > 2:2425505/1‑91 (MQ=255) tataAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtct > 2:2456278/1‑91 (MQ=255) taAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtcttc < 1:3660753/91‑1 (MQ=255) aaaaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTcta > 2:2988016/1‑91 (MQ=255) aaaaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTcta < 1:2667881/91‑1 (MQ=255) aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact > 1:2828815/1‑91 (MQ=255) aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact > 1:86908/1‑91 (MQ=255) aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact < 2:921604/91‑1 (MQ=255) | TTTTTACAATAATTAACGCTTTTTATCCAAAAACTTTCATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > USA300TCH1516_ALE/2573587‑2573767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |