| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2577878 | 151 (0.790) | 24 (0.140) | 11/140 | NT | 14.5% | intergenic (‑599/+71) | opuCA/USA300HOU_RS13285 | Carnitine transport ATP‑binding protein OpuCA/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2577890 | 152 (0.910) | intergenic (‑611/+59) | opuCA/USA300HOU_RS13285 | Carnitine transport ATP‑binding protein OpuCA/hypothetical protein | |||||
ACACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2577779‑2577878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaaccaaTGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAAA < USA300TCH1516_ALE/2577890‑2577801 ACACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAA > 1:2750020/1‑91ACACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAA < 2:1013650/91‑1 CACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAA > 2:3103581/1‑91 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA > 1:884381/1‑91 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA < 2:2444158/91‑1 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA > 1:1773773/1‑91 CCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAAC < 1:2958218/91‑1 CCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAAC > 2:576738/1‑91 CCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAAC < 1:641489/91‑1 CCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACA > 1:2165036/1‑91 CCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACA > 1:38263/1‑91 CCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACA < 1:3338099/91‑1 CTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAA > 2:1172332/1‑91 TTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAAC > 2:2475807/1‑91 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC < 2:1993175/91‑1 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC > 1:2432698/1‑91 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC > 1:3233367/1‑91 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC < 2:1993320/91‑1 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCT‑AAAAAACAACCA < 1:1639960/91‑1 GCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCA > 2:793841/1‑91 GCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCA < 2:2087539/91‑1 GCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGAAAAAAAAAAAAAAACAACCA < 2:2087526/91‑1 CCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA > 2:2129616/1‑91 CCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA > 2:2511783/1‑91 CCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACAAAAAAAAAAAAACAACCAA < 2:3659521/91‑1 TTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGC < 1:1275492/91‑1 ACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGC > 1:3429314/1‑91 TTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTT < 1:2049151/91‑1 TTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTG < 2:1675805/91‑1 TCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGG < 1:2891742/91‑1 TCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGG < 1:2891727/91‑1 TCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGG < 1:2575514/91‑1 CTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGT < 2:670591/91‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCTAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 1:3292855/91‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 1:1952480/91‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 2:2101364/91‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 1:2871016/91‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 1:578697/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:2925214/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 2:1945827/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:1766500/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:2670265/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 2:3429314/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 2:2150302/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:2670650/91‑1 TCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTT < 1:396936/91‑1 TCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTT < 1:3723434/91‑1 ATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTC > 2:1318716/1‑91 ATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTC < 1:1318716/91‑1 ACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGC < 1:1853499/91‑1 AAACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGG < 1:1035572/91‑1 AAACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGG > 2:673707/1‑91 AACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAGTTCCGTTACAGGCTTGGGA < 2:1213353/91‑1 AACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAGTTCCGTTACAGGCTTGGGA < 2:1213305/91‑1 AACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGA < 2:886105/91‑1 AACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGA > 2:2034358/1‑91 AACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGA < 1:2837989/91‑1 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG > 1:2164939/1‑91 CAACCAATGGCTTATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 2:3226106/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 1:3182842/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 2:3600315/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 2:3523944/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 1:3222383/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 1:908432/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 2:1245028/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 2:1765237/91‑1 AACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTA < 2:1207029/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 2:3222294/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG > 2:2034987/1‑91 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 2:1150271/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 2:3757180/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 1:1631770/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 1:1536673/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA < 1:37538/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA < 1:1481522/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 2:848680/1‑91 CAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAA > 1:1026065/1‑91 AATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAA > 2:428590/1‑91 ATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGCAGAAAA > 2:3117280/1‑91 ACACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2577779‑2577878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaaccaaTGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAAA < USA300TCH1516_ALE/2577890‑2577801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |