| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2580412 = | 187 (0.980) | 30 (0.180) | 16/142 | NT | 17.3% | intergenic (+47/‑561) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580445 = | 122 (0.720) | intergenic (+80/‑528) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580510‑2580412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT > USA300TCH1516_ALE/2580445‑2580534 ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAAT > 2:3729824/1‑91ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAAT > 1:1777065/1‑91 TTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATG > 2:2531577/1‑91 TTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATG > 1:2445757/1‑91 tgATGGCCCAGCCTGATCAGCATCTTGTTATGTTAGTTATTTATTACCGATTGTCAAGATAAAAAACCAACCAAGATGTTGAAATCAATGG < 1:3473181/89‑1 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG < 2:319633/91‑1 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG > 2:2831804/1‑91 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG > 2:2831601/1‑91 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG > 2:1207688/1‑91 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG > 1:524439/1‑91 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG < 1:429478/91‑1 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG > 1:3856315/1‑91 TATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGT < 1:1202726/91‑1 TATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGT > 1:1428146/1‑91 ATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTT < 2:1854826/91‑1 ATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTT > 2:2543624/1‑91 ATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTT < 2:1366589/91‑1 ATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTT < 1:240476/91‑1 TGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTG > 2:456278/1‑91 GTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGG < 1:1447381/91‑1 GTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGG < 2:2642499/91‑1 CCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT < 2:1978374/91‑1 CCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT < 2:478928/91‑1 ATCATCTTCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTT > 1:3017413/1‑91 ATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTT > 1:3020684/1‑91 TTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGG > 1:2383947/1‑91 TTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGG > 1:2383698/1‑91 ATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGGTGATCAG > 1:1935209/1‑91 ATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAG > 2:3236987/1‑91 ATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAG > 1:1935084/1‑91 TAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGG > 1:3486662/1‑91 AAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGC > 1:3300894/1‑91 AAAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTG > 1:165595/1‑91 AAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGG > 1:1718314/1‑91 AAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGG > 2:3103644/1‑91 AAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGG > 2:3104082/1‑91 AAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGG > 1:2328641/1‑91 AACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGG > 1:1505783/1‑91 ACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGA > 2:2840446/1‑91 ACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGA > 2:1742707/1‑91 ACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGA > 2:1588721/1‑91 ACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGA > 1:2198657/1‑91 ACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGA > 2:71612/1‑91 CCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGAC > 2:3868831/1‑91 AACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATGCCAAGATGATGATCAGGCTGGGACAT > 2:3356267/1‑91 AACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACAT > 1:3384042/1‑91 AACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACAT > 1:2330671/1‑91 ACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATA > 2:1734049/1‑91 CCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAA > 2:2810433/1‑91 AAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAAT > 2:2583641/1‑91 AAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAAT > 2:2584559/1‑91 GATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCA > 2:868237/1‑91 ATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAA > 1:1426331/1‑91 GGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTA > 1:2056202/1‑91 GTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTAC > 1:2146365/1‑91 TTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACG < 1:2388804/91‑1 TTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATG < 1:1479053/84‑1 TTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATG > 2:1479053/1‑84 TGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGA > 1:362235/1‑91 GGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAA > 2:3720453/1‑91 GGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAA > 2:3720815/1‑91 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 1:1590072/91‑1 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 1:1111557/91‑1 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTGCTATGCTCTACGAAG < 1:3313146/91‑1 GTTTTTTATTTTGAAAATCGGTTAGAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 2:3614734/91‑1 TTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT < 2:3473181/91‑1 TTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT < 1:3259373/91‑1 ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580510‑2580412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT > USA300TCH1516_ALE/2580445‑2580534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |