| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2651119 = | 166 (0.870) | 9 (0.050) | 6/146 | NT | 5.3% | intergenic (+62/‑311) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | 2651153 = | 170 (0.980) | intergenic (+96/‑277) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2651215‑2651119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA > USA300TCH1516_ALE/2651153‑2651242 ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG > 2:11849/1‑91ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG < 2:429154/91‑1 TTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGG < 1:1818038/91‑1 CACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGA < 2:2372525/91‑1 ACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGAT < 2:39195/91‑1 ACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGAT < 1:1990194/91‑1 CTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATT < 1:1006981/91‑1 TAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT < 1:1067225/91‑1 agcTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCCCCATTACTCGGGTGCAGGGACTTg > 1:1036088/4‑90 GGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTA > 1:116288/1‑91 GGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTA > 1:3140128/1‑91 ATCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGT > 1:1363853/1‑91 ATCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGT > 1:3140020/1‑91 TCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTG > 2:1112959/1‑91 TCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCATAATTTTTTAGGAAACTAGTG > 1:284721/1‑91 CCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGA > 1:2182080/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAA > 1:1712234/1‑91 GCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATAT > 2:3665504/1‑91 GGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAT < 1:1019436/91‑1 GGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAT > 1:3860875/1‑91 GGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATT > 2:3740463/1‑91 GGATTTTTTCATCCAAACTTTGGAAATTCCACATTTTACATATCGTAATTTTTTCGGAAACTCGTGAATATAACAAATCCCTCCTCTCAct > 2:302320/1‑89 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT < 2:2645750/91‑1 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT < 2:33906/91‑1 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT < 1:742365/91‑1 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT > 2:3592663/1‑91 ATTTTTTCATCCATATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 2:2181028/91‑1 ATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 2:900517/91‑1 ATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 1:1586658/91‑1 TTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCT > 1:357112/1‑82 TTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCT > 1:357208/1‑82 TTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCT < 2:357208/82‑1 TTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCT < 2:357112/82‑1 TTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTA < 2:3407120/91‑1 TTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAA‑TTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA > 2:3563552/1‑91 TTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAA‑TTTTTAGGAAACTAGTAAATATAACAAATCCCTCCTCTCATTTTTAA > 2:3563224/1‑91 TTTTCATCCAAATTTTGTAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACGAGTGAATATAACAAATCCCTCCTCTCATTTTTAA < 1:68491/91‑1 TTTTCATCCAAATTTTGGAAATTCCCCATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCCCCTCTCATTTTTAA > 2:2730933/1‑91 ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2651215‑2651119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA > USA300TCH1516_ALE/2651153‑2651242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |