BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2651119 =	166 (0.870)	9 (0.050)	6/146	NT	5.3%	intergenic (+62/‑311)	USA300HOU_RS13635/fbp	hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
*	?	USA300TCH1516_ALE	2651153 =	170 (0.980)	9 (0.050)	6/146	NT	5.3%	intergenic (+96/‑277)	USA300HOU_RS13635/fbp	hypothetical protein/Fructose‑1,6‑bisphosphatase class 3

Only 100 of 233 total aligned reads displayed.

AAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAAA  >  USA300TCH1516_ALE/2651064‑2651243

   gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCa                                                                                        >  2:2679523/1‑91 (MQ=255)

    tATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCAt                                                                                       <  1:1513516/91‑1 (MQ=255)

     aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                                                      >  1:867927/1‑91 (MQ=255)

     aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                                                      <  1:3062224/91‑1 (MQ=255)

      ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCATATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                                     >  1:987751/1‑91 (MQ=255)

      ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                                     >  2:3189393/1‑91 (MQ=255)

      taaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                                                     >  1:116288‑M1/50‑91 (MQ=255)

       tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCa                                                                                    >  1:185028/1‑91 (MQ=255)

       tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCa                                                                                    >  2:1431639/1‑91 (MQ=255)

         aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                                                  >  1:1592160/1‑91 (MQ=255)

            gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                                                               <  2:3561900/91‑1 (MQ=255)

              cTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTg                                                                             <  1:3613034/91‑1 (MQ=255)

               tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCTAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg                                                                            >  2:3057981/1‑91 (MQ=255)

                  aTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaaa                                                                         >  2:2018883/1‑91 (MQ=255)

                   tACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAAt                                                                        <  1:399472/91‑1 (MQ=255)

                     cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCCAATTTTGGAAATTc                                                                      <  2:3299193/91‑1 (MQ=255)

                     cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                                                      <  2:497761/91‑1 (MQ=255)

                     cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                                                      <  1:158096/91‑1 (MQ=255)

                     cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                                                      >  1:2900725/1‑91 (MQ=255)

                      acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                                                     <  1:1754492/91‑1 (MQ=255)

                      acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                                                     >  2:3358046/1‑91 (MQ=255)

                      acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                                                     >  1:2044688/1‑91 (MQ=255)

                          atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                                                                 >  1:896810/1‑91 (MQ=255)

                           tatTCCATTGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                                                                <  2:2137924/91‑1 (MQ=255)

                           tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                                                                >  2:2548858/1‑91 (MQ=255)

                           tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                                                                >  2:2137145/1‑91 (MQ=255)

                           tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTCTTCATCCAAATTTTGGAACTTCCACAtt                                                                >  2:2367326/1‑91 (MQ=255)

                            atTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAttt                                                               <  1:1322338/91‑1 (MQ=255)

                             ttCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtttt                                                              >  2:742365/1‑91 (MQ=255)

                             ttCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtttt                                                              >  2:1586658/1‑91 (MQ=255)

                              tCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTa                                                             >  1:2202606/1‑91 (MQ=255)

                               ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTAc                                                            >  1:2026064/1‑91 (MQ=255)

                               ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTAc                                                            >  1:1384072/1‑91 (MQ=255)

                                 aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                                                          >  1:520510/1‑91 (MQ=255)

                                 aTCGTAATTCAAAAGCATTTTCAAAGCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                                                          <  2:245506/91‑1 (MQ=255)

                                     tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCg                                                      >  2:2937752/1‑91 (MQ=255)

                                      aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTTATCCAAATTTTGGCAATTCCACATTTTACATATCGt                                                     <  1:2779778/91‑1 (MQ=255)

                                      aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                                     <  2:610138/91‑1 (MQ=255)

                                      aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                                     >  1:1093116/1‑91 (MQ=255)

                                          cAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATCTCGTAAtt                                                 >  2:17619/1‑91 (MQ=255)

                                          cAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtt                                                 <  2:1621596/91‑1 (MQ=255)

                                            aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt                                               <  1:3542012/91‑1 (MQ=255)

                                            aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt                                               <  1:1272627/91‑1 (MQ=255)

                                            aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt                                               <  1:897805/91‑1 (MQ=255)

                                              aTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttttt                                             >  2:2727808/1‑91 (MQ=255)

                                               ggatgaaaaaatccccgcaccattatttgggtgaagggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTa                                            >  1:3140128‑M2/43‑91 (MQ=255)

                                                cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  2:182335/91‑1 (MQ=255)

                                                cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  1:2413436/91‑1 (MQ=255)

                                                cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  1:2384828/91‑1 (MQ=255)

                                                cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  1:2384488/91‑1 (MQ=255)

                                                cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  2:3769487/91‑1 (MQ=255)

                                                cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  2:3811504/91‑1 (MQ=255)

                                                 aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg                                          <  2:3160603/91‑1 (MQ=255)

                                                 aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg                                          >  2:1418804/1‑91 (MQ=255)

                                                  ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCCTCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa                                         >  2:2992267/1‑91 (MQ=255)

                                                   tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa                                        >  1:1618013/1‑91 (MQ=255)

                                                   tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa                                        >  1:696709/1‑91 (MQ=255)

                                                    ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa                                       >  1:1704906/1‑91 (MQ=255)

                                                    ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa                                       <  1:2014860/91‑1 (MQ=255)

                                                    ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa                                       >  1:3416191/1‑91 (MQ=255)

                                                      cAAGTCCCTGCACCCGAGTAATGGGGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTaggaagct                                     >  1:1036088‑M1/2‑88 (MQ=255)

                                                      cAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACt                                     <  2:583549/91‑1 (MQ=255)

                                                      cAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTAGACATATCGTAATTTTTTAGGAAACt                                     >  2:3360420/1‑91 (MQ=255)

                                                        AATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAg                                   <  1:1006981‑M1/91‑1 (MQ=255)

                                                         atccccgcaccattatttgggtgaagggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGt                                  >  1:3140020‑M2/33‑91 (MQ=255)

                                                         ATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGt                                  <  1:1990194‑M1/91‑1 (MQ=255)

                                                          tccccgcaccattatttgggtgaagggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTg                                 >  2:1112959‑M2/32‑91 (MQ=255)

                                                           ccccgcaccattatttgggtgaagggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGa                                >  1:2182080‑M2/31‑91 (MQ=255)

                                                             CTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt                              >  2:11849‑M1/1‑91 (MQ=255)

                                                             CTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt                              <  2:429154‑M1/91‑1 (MQ=255)

                                                              ttCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAata                             >  2:300917/1‑91 (MQ=255)

                                                               gcaccattatttgggtgaagggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAatat                            >  2:3665504‑M2/27‑91 (MQ=255)

                                                                cACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAtata                           >  2:1919721/1‑91 (MQ=255)

                                                                    cAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACaa                       <  1:2695818/91‑1 (MQ=255)

                                                                    cAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACaa                       >  1:3047649/1‑91 (MQ=255)

                                                                      aataatGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAAt                     <  2:3883332/91‑1 (MQ=255)

                                                                       ataatGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATc                    <  1:172233/91‑1 (MQ=255)

                                                                       ataatGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATc                    >  1:2795298/1‑91 (MQ=255)

                                                                       ataatGGAGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATc                    <  1:1938615/91‑1 (MQ=255)

                                                                         aatGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATccc                  >  1:321015/1‑91 (MQ=255)

                                                                          atGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGCCACTAGTGAATATAACAAATTcct                 >  2:1675119/1‑91 (MQ=255)

                                                                           tGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctc                <  2:1724980/91‑1 (MQ=255)

                                                                            ggTGCGGGGTTTTTTTCATCCAAATTTTGGAAATTCCACATGTTACATCTCGTAATTTTTTAGGAAACTAGTGGATATAGCAGATCcctcc               <  2:2806179/91‑1 (MQ=255)

                                                                            ggTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcc               >  1:1795823/1‑91 (MQ=255)

                                                                            ggTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcc               >  1:58997/1‑91 (MQ=255)

                                                                            ggTGCGGGGATTATTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcc               <  2:3228085/91‑1 (MQ=255)

                                                                             gTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              <  2:1961546/91‑1 (MQ=255)

                                                                              tGCGGGGGTTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCctcctc             <  1:1942223/91‑1 (MQ=255)

                                                                              tGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCctcctc             <  1:2448655/91‑1 (MQ=255)

                                                                              tGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCctcctc             <  2:113290/91‑1 (MQ=255)

                                                                              tGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCctcctc             <  1:674030/91‑1 (MQ=255)

                                                                              tGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCctcctc             >  2:3402268/1‑91 (MQ=255)

                                                                               gCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCctct            >  2:2304866/1‑91 (MQ=255)

                                                                               gCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCctct            >  2:824437/1‑91 (MQ=255)

                                                                                cGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCtctc           >  1:45480/1‑91 (MQ=255)

                                                                                 ggggATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCa          <  2:1729808/91‑1 (MQ=255)

                                                                                    gatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAttt       >  2:3592663‑M2/6‑91 (MQ=255)

                                                                                      tttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              <  2:357112‑M2/79‑1 (MQ=255)

                                                                                      tttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              >  1:357112‑M2/4‑82 (MQ=255)

                                                                                         tttCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTaaa  >  1:3773660/1‑91 (MQ=255)

AAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAAA  >  USA300TCH1516_ALE/2651064‑2651243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.