New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2651119 =166 (0.870)9 (0.050) 6/146 NT 5.3% intergenic (+62/‑311) USA300HOU_RS13635/fbp hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
?USA300TCH1516_ALE 2651153 = 170 (0.980)intergenic (+96/‑277) USA300HOU_RS13635/fbp hypothetical protein/Fructose‑1,6‑bisphosphatase class 3

Only 100 of 279 total aligned reads displayed.

TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTA  >  USA300TCH1516_ALE/2651029‑2651209
                                                                                          |                                                                                          
tatttattTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA                                                                                            <  1:2705761‑M1/91‑1 (MQ=255)
tatttattTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA                                                                                            >  1:396259‑M1/1‑91 (MQ=255)
 ttaaaaatgagaggagggatttgttatattcactagtttcctaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaaa                                                                                           >  2:3563552‑M1/90‑91 (MQ=255)
 atttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA                                                                                           >  2:1202288‑M1/1‑91 (MQ=255)
 atttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA                                                                                           <  2:3778604‑M1/91‑1 (MQ=255)
 atttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA                                                                                           <  1:793142‑M1/91‑1 (MQ=255)
 atttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA                                                                                           >  1:2881166‑M1/1‑91 (MQ=255)
  tttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA                                                                                          <  1:2545738‑M1/91‑1 (MQ=255)
   ttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAAT                                                                                         >  2:1428084‑M1/1‑91 (MQ=255)
   aaaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAAt                                                                                         <  1:1586658‑M1/4‑1 (MQ=255)
   aaaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatatggatgaaaAAAt                                                                                         <  2:2181028‑M1/4‑1 (MQ=255)
    tatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC                                                                                        >  1:900517‑M1/1‑91 (MQ=255)
    aaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATc                                                                                        >  2:3592663‑M1/87‑91 (MQ=255)
    aaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATc                                                                                        <  2:33906‑M1/5‑1 (MQ=255)
     atttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCC                                                                                       >  1:852184‑M1/1‑91 (MQ=255)
     agtgagaggagggatttgttatattcacgagtttccgaaaaaattacgatatgtaaaatgtggaatttccaaagtttggatgaaaAAATcc                                                                                       >  2:302320‑M1/86‑91 (MQ=255)
     aatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATcc                                                                                       >  2:3740463‑M1/86‑91 (MQ=255)
      atgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATccc                                                                                      >  1:3860875‑M1/85‑91 (MQ=255)
      atgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATccc                                                                                      <  1:1019436‑M1/7‑1 (MQ=255)
       tttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCt                                                                                     <  1:406424/91‑1 (MQ=255)
        ttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCtt                                                                                    >  1:1596434/1‑91 (MQ=255)
         tCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTc                                                                                   >  1:3138281/1‑91 (MQ=255)
           aagaagAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAc                                                                                 >  1:3407120/1‑91 (MQ=255)
            agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc                                                                                <  1:3344551/91‑1 (MQ=255)
            agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc                                                                                <  1:242165/91‑1 (MQ=255)
             gaagaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAccc                                                                               >  1:3579401/1‑91 (MQ=255)
              aagaaAACTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCa                                                                              <  1:1932393/91‑1 (MQ=255)
              aagaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCa                                                                              >  1:111133/1‑91 (MQ=255)
              aagaaAAATATCTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCa                                                                              <  1:3517983/91‑1 (MQ=255)
                 aaaaaTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAaat                                                                           >  1:17444/1‑91 (MQ=255)
                    aaTATTTAGTAACTTCAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCACAATCATTTTCAAATCCCTTCACCCAaataat                                                                        >  1:1255859/1‑91 (MQ=255)
                       atTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGt                                                                     <  1:713000/91‑1 (MQ=255)
                        tttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtg                                                                    <  2:1398524‑M1/91‑19 (MQ=255)
                         ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc                                                                   >  2:2467703/1‑91 (MQ=255)
                         ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc                                                                   >  1:2987386/1‑91 (MQ=255)
                         ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc                                                                   >  1:3883332/1‑91 (MQ=255)
                         ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc                                                                   >  1:610138/1‑91 (MQ=255)
                           aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                 <  2:49429‑M2/91‑2 (MQ=255)
                            gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                >  2:2607728‑M2/1‑89 (MQ=255)
                            gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                >  2:1139518‑M2/1‑89 (MQ=255)
                            gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                >  1:643848‑M2/1‑89 (MQ=255)
                             tcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCgggg                                                               >  1:2182080‑M1/62‑91 (MQ=255)
                             tAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaaggg                                                               <  1:1730937‑M1/91‑24 (MQ=255)
                              cactagtttcctaaaaaattatgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCGGGGa                                                              >  1:284721‑M1/61‑91 (MQ=255)
                              aaCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaaggga                                                              <  2:1348185‑M1/91‑25 (MQ=255)
                              aaCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggga                                                              >  1:1515063‑M2/1‑87 (MQ=255)
                              aaCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggga                                                              >  1:2277892‑M2/1‑87 (MQ=255)
                               aCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggat                                                             <  1:758571‑M2/91‑6 (MQ=255)
                                  tAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaagggatttg                                                          <  1:953434‑M1/91‑29 (MQ=255)
                                  tAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaagggatttg                                                          <  2:3271507‑M1/91‑29 (MQ=255)
                                   aaaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaagggatttga                                                         <  1:989601‑M1/91‑30 (MQ=255)
                                   aaaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGAttttt                                                         <  1:3633848/91‑1 (MQ=255)
                                      gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCa                                                      >  2:2679479/1‑91 (MQ=255)
                                       tATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCAt                                                     <  2:31439/91‑1 (MQ=255)
                                         ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                   >  2:3189393/1‑91 (MQ=255)
                                         ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                   <  1:2178465/91‑1 (MQ=255)
                                         taaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                   >  1:3140128‑M1/50‑91 (MQ=255)
                                            aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                >  2:159656/1‑91 (MQ=255)
                                             aTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAt                                               >  2:1938615/1‑91 (MQ=255)
                                               gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                             >  1:1282427/1‑91 (MQ=255)
                                               gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                             >  1:8927/1‑91 (MQ=255)
                                               gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                             <  2:3561900/91‑1 (MQ=255)
                                                        cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCCAATTTTGGAAATTc                                    <  2:3299193/91‑1 (MQ=255)
                                                        cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                    <  1:3070011/91‑1 (MQ=255)
                                                         acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                   >  1:1143274/1‑91 (MQ=255)
                                                         acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                   >  2:3358391/1‑91 (MQ=255)
                                                           acaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcac                                 >  1:1772739/1‑91 (MQ=255)
                                                            caTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcaca                                >  2:1540688/1‑91 (MQ=255)
                                                            caTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcaca                                >  2:1726237/1‑91 (MQ=255)
                                                             atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                               >  1:896963/1‑91 (MQ=255)
                                                              tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                              >  2:2137145/1‑91 (MQ=255)
                                                                ttCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtttt                            >  2:742365/1‑91 (MQ=255)
                                                                ttCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtttt                            >  1:3266992/1‑91 (MQ=255)
                                                                 tCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAACTAATGGTGCGGGGATTTTTTCATCCAGATTTTGGAAATTCCACATTTTa                           >  2:2943503/1‑91 (MQ=255)
                                                                  ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTAc                          >  1:1384072/1‑91 (MQ=255)
                                                                    aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                        >  1:520510/1‑91 (MQ=255)
                                                                         aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTTATCCAAATTTTGGCAATTCCACATTTTACATATCGt                   <  1:2779895/91‑1 (MQ=255)
                                                                         aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                   <  2:610138/91‑1 (MQ=255)
                                                                          aTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTa                  <  1:146660/91‑1 (MQ=255)
                                                                             cAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATCTCGTAAtt               >  2:17619/1‑91 (MQ=255)
                                                                             cAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtt               <  2:1621596/91‑1 (MQ=255)
                                                                              aaaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAttt              >  1:3174366/1‑91 (MQ=255)
                                                                                 aTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttttt           >  2:2727808/1‑91 (MQ=255)
                                                                                  tCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTACATATCGTAATTTTTTAg         <  2:108876/91‑1 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         >  2:2045292/1‑91 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  2:182335/91‑1 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  1:2413436/91‑1 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  1:2384509/91‑1 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  2:3811504/91‑1 (MQ=255)
                                                                                    aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg        >  1:3545743/1‑91 (MQ=255)
                                                                                     ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa       >  1:2034523/1‑91 (MQ=255)
                                                                                      tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa      >  1:696709/1‑91 (MQ=255)
                                                                                      tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa      >  1:1618013/1‑91 (MQ=255)
                                                                                       ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa     <  1:2014860/91‑1 (MQ=255)
                                                                                       ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaaa     >  1:1704906/1‑91 (MQ=255)
                                                                                        tCAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatacttt    <  1:845337‑M2/91‑63 (MQ=255)
                                                                                        tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc    >  2:2357464/1‑91 (MQ=255)
                                                                                         cAAGTCCCTGCACCCGAGTAATGGGGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTaggaagct   >  1:1036088‑M1/2‑88 (MQ=255)
                                                                                         cAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACt   <  2:583549/91‑1 (MQ=255)
                                                                                          aaaTCCCcgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaa  >  2:1649299‑M1/1‑7 (MQ=255)
                                                                                          |                                                                                          
TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTA  >  USA300TCH1516_ALE/2651029‑2651209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.