| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2656579 | 187 (0.980) | 7 (0.040) | 5/146 | NT | 3.7% | intergenic (‑74/+4) | mhqA_3/mhqR | Putative ring‑cleaving dioxygenase MhqA/HTH‑type transcriptional regulator MhqR |
| ? | USA300TCH1516_ALE | = 2656599 | 197 (1.130) | coding (419/435 nt) | mhqR | HTH‑type transcriptional regulator MhqR | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTAATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2656483‑2656579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgcacAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTATA < USA300TCH1516_ALE/2656599‑2656510 AGTAATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTA < 2:736321/91‑1 GTAATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAG > 1:1707659/1‑91 GTAATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAACCCAGATACCTTAATGTAAATTTTTAG > 2:1858764/1‑91 TAATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGT < 1:1402117/91‑1 AATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGTAATCGAGATACTTTAATGTAAATTTTTAGTG < 2:2961510/91‑1 AATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTG < 2:815846/91‑1 AATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTG < 1:2397800/91‑1 AATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTG > 2:3134815/1‑91 AATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTG < 2:3709944/91‑1 ATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGC < 1:115420/91‑1 TTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCA > 2:2837052/1‑91 TTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCA < 2:2285464/91‑1 TTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCA < 2:2285340/91‑1 TTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCA > 2:486893/1‑91 TCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCAC > 1:3393264/1‑91 TCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCAC < 1:3457620/91‑1 ATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCACAATCTACAGAAGTGTAAGGC < 1:2257371/91‑1 ATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCACAATCTACAGAAGTGTAAGGCGT < 1:750379/91‑1 TCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCACAATCTACAGAAGTGTAAGGCGTGCACTA < 1:2919519/91‑1 CTTTATATTTTTAGTGCATTTATCTCGAAATCTAGATACTTTAATGTAAATTTTTAGTGCACAATCTACAGAAGTATAAGGCGTGCACTAA < 1:3300761/91‑1 CTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCACAATCTACAGAAGTCTAAGGCGTGCACTAA < 1:3300599/91‑1 CTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGAAAATTTCTAGTGCACAATCTACTGAAGTGTAAGGCGTGCACTAA < 1:3257227/91‑1 TTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATATAAATTTTTAGTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAA < 1:3086227/91‑1 AGTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAG < 2:282868/91‑1 gttCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGG > 2:1263608/4‑91 GTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGG > 2:3627835/1‑91 GTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGG > 2:3627781/1‑91 GTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGG > 2:1263626/1‑91 GTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGG < 2:2705159/91‑1 GTGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGG > 2:1263609/1‑91 TGCACTATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGG < 2:3146988/91‑1 TGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGG < 1:2342340/91‑1 TGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGA > 2:3550892/1‑88 TGCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGA < 1:3550892/88‑1 GCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGT > 2:2285123/1‑91 GCACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGT > 2:677725/1‑91 CACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTA > 1:1858764/1‑91 ACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTAT > 2:3004502/1‑91 ACAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTAT < 2:1103961/91‑1 CAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTATA < 1:3004502/91‑1 CAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTATA < 2:952186/91‑1 AGTAATTCATGATTATTTATCATTTTATATACCCTCTTTATATTTTTAGTGCATTTATCTCGAAATCGAGATACTTTAATGTAAATTTTTAGTGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2656483‑2656579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgcacAATCTACAGAAGTGTAAGGCGTGCACTAAAAATTTACATTAAAGTATCTCGATTTCGAGATAAATGCACTAAAAATATAAAGAGGGTATA < USA300TCH1516_ALE/2656599‑2656510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |