| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2661803 | 153 (0.800) | 13 (0.090) | 10/128 | NT | 8.5% | intergenic (‑196/‑125) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI |
| ? | USA300TCH1516_ALE | = 2661815 | 157 (1.030) | intergenic (‑208/‑113) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI | |||||
TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2661698‑2661803‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatcacactatatttTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG < USA300TCH1516_ALE/2661815‑2661726 TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAA < 2:3734204/91‑1 CACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAAT > 1:1198840/1‑91 CATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATAT > 1:64894/1‑91 CATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATAT < 2:438980/91‑1 ATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATC > 1:3827257/1‑91 TTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCA > 1:3755101/1‑91 TTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCA > 1:3683067/1‑91 TTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATACCAC > 1:3493223/1‑91 TTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACA > 1:2117058/1‑91 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATGTAGCATTCAGAGGCGAACATAAATTCCAGAATATTGTAAAAATATCACAC > 2:3602762/1‑91 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC > 1:2809124/1‑91 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC < 2:3419340/91‑1 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC < 1:1583056/91‑1 TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC < 1:1582820/91‑1 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT < 1:472440/91‑1 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT > 2:1506342/1‑91 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT > 1:2850000/1‑91 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT > 2:2861149/1‑91 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT < 2:1595793/91‑1 GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT > 2:1506646/1‑91 AAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTA > 1:2302777/1‑91 AAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTA < 2:1293004/91‑1 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCTGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT > 1:3084421/1‑91 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACGCTAT > 1:2627378/1‑91 AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT > 1:137289/1‑91 ATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATA < 2:2604136/91‑1 TTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT < 2:664450/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGTCGAACATAAATTTCAGAATATTGTAAAAATATAACGATATATT < 2:528804/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:2771820/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:1522682/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:2217891/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:843638/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT > 1:1371961/1‑91 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT > 1:1371947/1‑91 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:419981/91‑1 TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT < 1:419722/91‑1 GCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT > 2:1895400/1‑91 GCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT > 1:883096/1‑91 TATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAA < 1:3781651/91‑1 CAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATA < 1:1045199/91‑1 AAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAA < 2:2920316/91‑1 AACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAAT < 1:1694820/91‑1 TACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGT < 1:3800211/91‑1 TACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGT < 1:1848531/91‑1 ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG < 1:2114299/91‑1 ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG < 2:2175561/91‑1 ACACTGGATATAGCAATCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG < 2:3165202/91‑1 CACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGA < 1:3844031/91‑1 CTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATA < 1:2716396/91‑1 ATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTT < 2:295596/91‑1 TATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTT < 1:3047375/91‑1 ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTGTGTTCGCCTCTGAATGCTATATCCA > 1:3604281/1‑91 ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCA < 2:2817024/91‑1 ATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTC > 2:3781222/1‑74 ATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTC < 1:3781222/74‑1 TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTG > 2:989620/1‑91 TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTG < 2:846718/91‑1 TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTCAATGCTATATCCAGTG > 2:3704676/1‑91 TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATACTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTG > 2:3194922/1‑91 CACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT < 1:2867389/91‑1 ACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTA < 2:1490249/91‑1 ACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTA < 2:2817807/91‑1 ACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTA < 1:3076197/91‑1 ACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTA > 1:3118950/1‑91 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG < 1:1824583/91‑1 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG < 2:1595143/91‑1 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG < 2:3679587/91‑1 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG < 2:3679546/91‑1 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG < 2:1704817/91‑1 CTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATG < 2:3486215/91‑1 TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT > 2:635299/1‑91 TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT < 2:3685/91‑1 TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT < 2:1630832/91‑1 TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATCTTCGCCTCTGAATGCTATATCCAGTGTAATGT > 1:3305270/1‑91 ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAACTTTATGTTCGCCTGTGAATGCTATATCCAGTGTCATGTG > 1:3615612/1‑91 ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTTTAATGTG > 1:1941938/1‑91 ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTG > 2:1338750/1‑91 ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTG > 2:1073131/1‑91 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 2:1141309/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT < 2:1889707/91‑1 TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT > 2:278462/1‑91 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT > 2:3496758/1‑91 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT > 1:609712/1‑91 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT > 1:609145/1‑91 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT < 1:498556/91‑1 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT > 1:418269/1‑91 TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT > 2:2286095/1‑91 TTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTT > 1:921510/1‑91 TTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTT < 2:1808995/91‑1 TTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTT < 2:1809160/91‑1 TTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGAGTTTT > 2:3136690/1‑91 TTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG < 2:384957/91‑1 TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2661698‑2661803‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatcacactatatttTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG < USA300TCH1516_ALE/2661815‑2661726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |