BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2661803	153 (0.800)	13 (0.090)	10/128	NT	8.5%	intergenic (‑196/‑125)	ybiV/yydI	Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI
*	?	USA300TCH1516_ALE	= 2661815	157 (1.030)	13 (0.090)	10/128	NT	8.5%	intergenic (‑208/‑113)	ybiV/yydI	Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI

Only 100 of 234 total aligned reads displayed.

GCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCC  >  USA300TCH1516_ALE/2661725‑2661905

  aaaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaa                                                                                          >  1:921510‑M2/1‑89 (MQ=255)

  aaaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaa                                                                                          <  2:1809160‑M2/91‑3 (MQ=255)

   aaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaa                                                                                         >  2:2286095‑M2/1‑88 (MQ=255)

   aaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaa                                                                                         >  1:609145‑M2/1‑88 (MQ=255)

   aaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaa                                                                                         <  1:498556‑M2/91‑4 (MQ=255)

      cacaTGACACTGGATATAGCATTCACAGGCGAACATAAAGTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatat                                                                                      >  1:3615612‑M2/1‑85 (MQ=255)

       acaTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatata                                                                                     <  2:3685‑M2/91‑8 (MQ=255)

       acaTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatata                                                                                     <  2:1630832‑M2/91‑8 (MQ=255)

        caTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatatag                                                                                    <  1:1824583‑M2/91‑9 (MQ=255)

           tACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatatagtgt                                                                                 <  2:1490249‑M2/91‑12 (MQ=255)

            acacTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatatagtgtg                                                                                <  1:2867389‑M2/91‑13 (MQ=255)

                  gATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATAc                                                                          <  2:3072369/91‑1 (MQ=255)

                  gATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATAc                                                                          >  2:1451457/1‑91 (MQ=255)

                   atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACt                                                                         >  1:3344497/1‑91 (MQ=255)

                   atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACt                                                                         <  1:729668/91‑1 (MQ=255)

                     ataGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTaa                                                                       >  1:2748291/1‑91 (MQ=255)

                       aGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtt                                                                     >  1:142135/1‑91 (MQ=255)

                       aGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtt                                                                     >  2:1924569/1‑91 (MQ=255)

                       aGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtt                                                                     >  2:1344146/1‑91 (MQ=255)

                        gCATTCAGAAGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAttt                                                                    >  1:1949274/1‑91 (MQ=255)

                         cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtttc                                                                   >  2:3843017/1‑90 (MQ=255)

                         cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTta                                                                   <  2:795740/91‑1 (MQ=255)

                         cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTta                                                                   >  1:3584798/1‑91 (MQ=255)

                          aTTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtat                                                                  <  1:125424/91‑1 (MQ=255)

                               gagGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatatagtgtgat                                                                              <  1:3781222‑M2/74‑15 (MQ=255)

                               gagGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAaaatatagtgtgat                                                                              >  2:3781222‑M2/1‑60 (MQ=255)

                               gagGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACAt                                                             >  2:1806271/1‑91 (MQ=255)

                               gagGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACAt                                                             <  1:3343471/91‑1 (MQ=255)

                                agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc                                                            >  2:1740420/1‑91 (MQ=255)

                                agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc                                                            >  1:2955810/1‑91 (MQ=255)

                                agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc                                                            >  2:2444044/1‑91 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtata                                                                 <  2:348625/85‑1 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtata                                                                 >  1:348625/1‑85 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                           >  2:1266082/1‑91 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                           >  2:870590/1‑91 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                           >  1:2478434/1‑91 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                           <  1:1902562/91‑1 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                           <  1:3173603/91‑1 (MQ=255)

                                 ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt                                                           >  1:216930/1‑91 (MQ=255)

                                  gCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCta                                                          >  2:2634309/1‑91 (MQ=255)

                                    gAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtata                                                        <  1:787131/91‑1 (MQ=255)

                                    gAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtata                                                        <  1:1957351/91‑1 (MQ=255)

                                     aaCATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATAc                                                       >  2:3309742/1‑91 (MQ=255)

                                      aCATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACa                                                      <  2:1949274/91‑1 (MQ=255)

                                       cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACAt                                                     >  2:2593735/1‑91 (MQ=255)

                                           aaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACCAAATATAGTGTGATATACTAATTTATAACATCTATACATAAtg                                                 >  1:3883541/1‑91 (MQ=255)

                                           aaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAAtg                                                 >  2:1041246/1‑91 (MQ=255)

                                               tCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACGTCTATACATAATGTGaa                                             <  1:952066/91‑1 (MQ=255)

                                               tCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGaa                                             <  1:270225/91‑1 (MQ=255)

                                                 aGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAg                                           <  2:3136195/91‑1 (MQ=255)

                                                  gAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGa                                          >  2:691846/1‑91 (MQ=255)

                                                    atatTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAt                                        <  1:438191/91‑1 (MQ=255)

                                                     tatTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGaaaa                                       <  2:3738703/91‑3 (MQ=255)

                                                      atTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttt                                      <  2:2574034/91‑1 (MQ=255)

                                                      atTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttt                                      >  1:1453835/1‑91 (MQ=255)

                                                       ttGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAtttt                                     <  2:2535841/91‑1 (MQ=255)

                                                        tGTAAAAATATCACACTATATTTATCATTTAGATAAAATATAGTGTGATATACTAATTTCTAACATCTATACATAATGTGAAAGAAttttt                                    >  1:3092820/1‑91 (MQ=255)

                                                        tGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttttt                                    <  1:385410/91‑1 (MQ=255)

                                                        tGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttttt                                    >  1:3406208/1‑91 (MQ=255)

                                                           aaaaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaa                                 <  2:2643580/91‑1 (MQ=255)

                                                           aaaaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaa                                 >  2:3149666/1‑91 (MQ=255)

                                                            aaaaTATCACACTATATTTATCATTTAGACAaaatatagtgtgatatttttacaatattctgaaatttatgttcgcctctgaatgctatat                                <  2:295596‑M2/91‑61 (MQ=255)

                                                             aaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaaaa                               <  2:1515805/91‑1 (MQ=255)

                                                             aaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaaaa                               <  2:1516115/91‑1 (MQ=255)

                                                                tatCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATAc                            <  2:1657070/91‑1 (MQ=255)

                                                                 atCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACa                           <  1:3685/91‑1 (MQ=255)

                                                                  tCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACaa                          >  1:2070299/1‑91 (MQ=255)

                                                                  tCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACaa                          >  1:2272139/1‑91 (MQ=255)

                                                                  tCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACaa                          >  2:1172854/1‑91 (MQ=255)

                                                                   cacaCTATATTTATCATTTAGACAaaatatagtgtgatatttttacaatattctgaaatttatgttcgcctctgattgctatatccagtgt                         <  2:3165202‑M2/91‑68 (MQ=255)

                                                                   cacaCTATATTTATCATTTAGACAaaatatagtgtgatatttttacaatattctgaaatttatgttcgcctctgaatgctatatccagtgt                         <  1:2114299‑M2/91‑68 (MQ=255)

                                                                   cacaCTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAt                         <  2:1964133/91‑1 (MQ=255)

                                                                   cacaCTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAt                         <  1:2817807/91‑1 (MQ=255)

                                                                    acacTATATTTATCATTTAGACAaaatatagtgtgatatttttacaatattctgaaatttatgttcgcctctgaatgctatatccagtgta                        <  1:3800211‑M2/91‑69 (MQ=255)

                                                                    acacTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAtt                        >  1:1744106/1‑91 (MQ=255)

                                                                    acacTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAtt                        >  1:3326957/1‑91 (MQ=255)

                                                                      acTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTaa                      >  2:2139323/1‑91 (MQ=255)

                                                                      acTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTaa                      >  2:3885655/1‑91 (MQ=255)

                                                                       cTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTaaa                     <  2:1539681/91‑1 (MQ=255)

                                                                       cTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATCaaa                     >  1:3063358/1‑91 (MQ=255)

                                                                         atatTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAata                   <  1:1072920/91‑1 (MQ=255)

                                                                          tatTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                  <  1:2281893/91‑1 (MQ=255)

                                                                          tatTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                  <  1:1869162/91‑1 (MQ=255)

                                                                          tatTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                  <  1:424904/91‑1 (MQ=255)

                                                                           atTTATCATTTAGACAaaatatagtgtgatatttttacaatattctgaaatttatgttcgcctctgaatgctatatccagtgtaatgtgtt                 <  1:1694820‑M2/91‑76 (MQ=255)

                                                                            tttATCATTTAGACAaaatatagtgtgatatttttacaatattctgaaatttatgttcgcctctgaatgctatatccagtgtaatgtgttt                <  2:2920316‑M2/91‑77 (MQ=255)

                                                                            tttATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCg                >  1:1041086/1‑91 (MQ=255)

                                                                              tATCATTTAGACAAAATATAGTGCGATATACTAATTTATAACAGCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAGTATCGgt              <  2:3615944/91‑1 (MQ=255)

                                                                               aTCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGgtg             <  2:2798962/91‑1 (MQ=255)

                                                                                tCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGgtgt            <  1:1667769/91‑1 (MQ=255)

                                                                                 cATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGta           <  2:673347/91‑1 (MQ=255)

                                                                                  aTTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaa          <  1:2583935/91‑1 (MQ=255)

                                                                                  aTTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaa          <  1:3653667/91‑1 (MQ=255)

                                                                                   tttAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaat         <  2:849216/91‑1 (MQ=255)

                                                                                    ttAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaata        <  1:1001734/91‑1 (MQ=255)

                                                                                      aGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATaaa      <  1:203301/91‑1 (MQ=255)

                                                                                      aGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATaaa      >  1:618305/1‑91 (MQ=255)

                                                                                       gACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAAt     <  2:498556/91‑1 (MQ=255)

                                                                                       gACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAAt     >  2:1700368/1‑91 (MQ=255)

                                                                                          aaaaGATAGTGTGATATACTGATTTATAACAGCTATACAGAATGTGAAAGAATTTTTAAAGAGACAATTGAATAACGGTGTAATAAATccc  <  2:1399407/91‑1 (MQ=255)

GCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCC  >  USA300TCH1516_ALE/2661725‑2661905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.