| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2696548 = | 172 (0.900) | 20 (0.120) | 10/140 | NT | 12.6% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 128 (0.770) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696587‑2696676 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:3240641/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:652391/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:1151362/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:585954/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:585596/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:3282838/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:1382735/1‑91 CCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTAGTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACA < 2:3061234/91‑1 CCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTAGTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACA < 2:3061569/91‑1 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAA > 2:2672509/1‑91 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAA > 1:3035522/1‑91 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT < 2:2520260/91‑1 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT > 1:2664422/1‑91 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT > 1:2663323/1‑91 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC < 1:3015998/91‑1 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC < 2:897374/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT > 1:1092054/1‑91 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT > 1:3852811/1‑91 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT > 2:1394938/1‑91 TATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTC < 2:1138636/91‑1 ATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCT > 1:2528147/1‑91 TAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTC < 1:2274178/91‑1 TAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTC > 1:613032/1‑91 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT > 2:1210004/1‑91 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 1:73039/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT > 2:1211964/1‑91 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT > 2:2687258/1‑91 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT > 1:1147387/1‑91 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT > 1:1147517/1‑91 TTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTG > 1:1894870/1‑91 AAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATA > 1:1200597/1‑91 AAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATA > 1:942741/1‑91 AAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATA > 1:2259587/1‑91 AAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAC > 2:2037729/1‑91 AAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTCGTAAAAGTAAAACGCAACGATTGACTTATATAC > 1:3184426/1‑91 AGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT > 2:3039147/1‑91 GAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTA > 1:1739183/1‑91 GAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTA > 1:1245576/1‑91 AGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTAT > 2:1328665/1‑91 AGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTAT > 1:2885566/1‑91 AGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTAT > 1:1576945/1‑91 TTGCGGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 1:3062191/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 2:3108697/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 1:3591429/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 2:627555/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 1:2621521/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 1:928341/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 2:3515777/1‑91 CGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTTAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTAC > 2:458504/1‑91 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACTATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG < 2:2104248/91‑1 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG < 2:2325339/91‑1 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG > 1:2492542/1‑91 AATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGA < 2:3753434/91‑1 AATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGA < 1:2836136/91‑1 ATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAA < 2:523518/91‑1 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT > 2:2171112/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 2:2272220/91‑1 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 2:3697841/1‑91 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA < 1:2668404/91‑1 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA < 2:3731334/91‑1 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA < 2:727611/91‑1 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA > 1:3468502/1‑91 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > 2:3468168/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGTAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGACTCACA > 2:3138944/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA < 2:1307494/91‑1 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG < 1:1372498/91‑1 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG < 1:1372935/91‑1 TTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > 1:1584063/1‑91 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696587‑2696676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |