| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2696548 = | 172 (0.900) | 20 (0.120) | 10/140 | NT | 12.6% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 128 (0.770) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
Only 100 of 213 total aligned reads displayed.
TTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696497‑2696676 | ttcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt < 2:3216918/91‑1 (MQ=255) gtatataagtcaatcgttgcgttttacttttacgaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtcttt > 1:3184426‑M1/51‑91 (MQ=255) tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGCTTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc > 2:146269/1‑91 (MQ=255) aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct < 2:1173503/91‑1 (MQ=255) ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt < 1:203018/91‑1 (MQ=255) ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt < 1:1675949/91‑1 (MQ=255) cTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTa > 1:569772/1‑91 (MQ=255) caatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaa > 1:1894870‑M1/41‑91 (MQ=255) ttAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaa > 1:3184548/1‑91 (MQ=255) ttAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaa < 2:1761743/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGGTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 1:3079296/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 1:2081433/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 2:1851543/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 1:1757980/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 2:2803053/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 2:3685010/91‑1 (MQ=255) aaTATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt < 1:3868714/91‑1 (MQ=255) aaTATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt > 2:699203/1‑91 (MQ=255) atatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAtt > 2:1996535/1‑91 (MQ=255) atatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAtt < 2:552473/91‑1 (MQ=255) attaattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTgg > 2:3771922/1‑91 (MQ=255) ttaattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgt > 2:2144273/1‑91 (MQ=255) aattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaa > 2:2170328/1‑91 (MQ=255) attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa > 2:2077899/1‑91 (MQ=255) attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa < 1:1568154/91‑1 (MQ=255) gACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaa > 2:3314005/1‑91 (MQ=255) aCTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaa > 2:3146343/1‑91 (MQ=255) cttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCACTGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaaa > 1:674573/1‑91 (MQ=255) ttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAAc < 2:1731206/91‑1 (MQ=255) ttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAAc > 1:2237756/1‑91 (MQ=255) cttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc > 1:968407/1‑91 (MQ=255) ttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc > 1:1415609/1‑91 (MQ=255) ttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc < 1:841119/91‑1 (MQ=255) ttATATAGATGCTAAGTAGAGAGATTATTGTGCAATGTTTGCACGGCAATCTCtctttt > 2:2220918/1‑59 (MQ=255) ttATATAGATGCGAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc < 2:1641238/91‑1 (MQ=255) tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg > 2:80598/1‑91 (MQ=255) tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg < 1:3373916/91‑1 (MQ=255) atataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGa < 1:3352297/91‑1 (MQ=255) atataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGa > 1:2481751/1‑91 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt > 2:456124/1‑91 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt < 1:633567/91‑1 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt > 2:2381540/1‑91 (MQ=255) aGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa < 2:3540087/91‑1 (MQ=255) aGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa < 1:1263448/91‑1 (MQ=255) gATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGAc > 1:3476709/1‑91 (MQ=255) gATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGAc > 1:1818296/1‑91 (MQ=255) gATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGAc > 1:2794123/1‑91 (MQ=255) tGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt > 2:2175436/1‑91 (MQ=255) gCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTta < 1:244740/91‑1 (MQ=255) cTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtat > 2:604338/1‑91 (MQ=255) aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat > 1:1028878/1‑91 (MQ=255) aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat < 1:3722250/91‑1 (MQ=255) aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat < 2:2622210/91‑1 (MQ=255) aaaagagagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata > 1:2259587‑M2/43‑91 (MQ=255) aaaagagagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata > 1:942741‑M2/43‑91 (MQ=255) aaaagagagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata > 1:1200597‑M2/43‑91 (MQ=255) gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc < 2:1431661/91‑1 (MQ=255) gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc < 1:3446748/91‑1 (MQ=255) gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc < 2:1663597/91‑1 (MQ=255) aaagagagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc > 2:2037729‑M2/42‑91 (MQ=255) tAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc < 2:2466104/91‑1 (MQ=255) AGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCt > 1:1147387‑M1/1‑91 (MQ=255) AGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCt > 2:1211964‑M1/1‑91 (MQ=255) agagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCtat > 2:1328665‑M2/38‑91 (MQ=255) AGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCtat > 1:2528147‑M1/1‑91 (MQ=255) GAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCtata < 2:1138636‑M1/91‑1 (MQ=255) GATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgg < 1:3015998‑M1/91‑1 (MQ=255) ATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggg < 2:2520260‑M1/91‑1 (MQ=255) ATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggg > 1:2663323‑M1/1‑91 (MQ=255) TTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgggg > 2:2672509‑M1/1‑91 (MQ=255) TGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAACTAAAACGCAACGATTGACTTATATACCTATAggggg < 2:3061234‑M1/91‑1 (MQ=255) gccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 2:627555‑M2/31‑91 (MQ=255) gccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 2:3108697‑M2/31‑91 (MQ=255) GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 1:1382735‑M1/1‑91 (MQ=255) GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 1:1151362‑M1/1‑91 (MQ=255) GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 2:585596‑M1/1‑91 (MQ=255) ccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTa > 1:928341‑M2/30‑91 (MQ=255) tgtgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTATAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTAc > 2:2478756/1‑91 (MQ=255) tgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAt > 2:3435946/1‑91 (MQ=255) tgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAt < 2:1550519/91‑1 (MQ=255) cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa < 1:2737919/91‑1 (MQ=255) cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa < 1:1368467/91‑1 (MQ=255) cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa < 2:3277101/91‑1 (MQ=255) gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg < 1:2799390/91‑1 (MQ=255) gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg < 2:460989/91‑1 (MQ=255) gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg < 1:1148236/91‑1 (MQ=255) ttGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtg < 2:3024104/91‑1 (MQ=255) cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa > 1:3802218/1‑91 (MQ=255) aCGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAAc < 1:1371377/91‑1 (MQ=255) caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATg > 1:2492542‑M2/11‑91 (MQ=255) aatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGa < 2:3753434‑M2/82‑1 (MQ=255) aatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGa < 1:2836136‑M2/82‑1 (MQ=255) ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc < 2:2272220‑M2/85‑1 (MQ=255) ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc > 2:3697841‑M2/7‑91 (MQ=255) tctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATca < 2:727611‑M2/86‑1 (MQ=255) tctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATca > 1:3468502‑M2/6‑91 (MQ=255) tctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATca < 2:3731334‑M2/86‑1 (MQ=255) tctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATca < 1:2668404‑M2/86‑1 (MQ=255) tctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATcaca < 2:1307494‑M2/88‑1 (MQ=255) tTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAgg > 1:1584063‑M2/2‑91 (MQ=255) | TTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696497‑2696676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |