| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2719380 | 139 (0.730) | 6 (0.040) | 5/136 | NT | 4.5% | coding (324/705 nt) | cpnA | Cyclopentanol dehydrogenase |
| ? | USA300TCH1516_ALE | = 2719397 | 138 (0.850) | coding (341/705 nt) | cpnA | Cyclopentanol dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2719279‑2719380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaatgtattcATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT < USA300TCH1516_ALE/2719397‑2719308 CTTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAA > 2:2414352/1‑91 TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAAC < 1:3586513/91‑1 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG < 2:3241212/91‑1 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG > 1:251397/1‑91 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 1:607290/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 1:606325/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 2:28075/91‑1 ATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAA > 2:866753/1‑91 ATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAA < 2:1834421/91‑1 ATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAA > 2:2326106/1‑91 TATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGTAT > 1:2524019/1‑91 TATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAAT > 1:42917/1‑91 TATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAACACCTTCCAAATTGACACCTCGTGAAGTTGAAGAAGTATATCAAACGAAT > 2:3612810/1‑91 ATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATa < 2:1397846/91‑2 ATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATG > 1:6990/1‑91 ATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATG < 1:1408409/91‑1 CCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTA > 2:1151429/1‑91 CTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTAT > 1:3199946/1‑91 CTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTAT < 2:1097271/91‑1 TCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATT < 1:1375522/91‑1 TCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATT < 1:3193810/91‑1 TCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATT < 1:2918872/91‑1 CATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC < 1:2225568/91‑1 CATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC < 2:3338201/91‑1 CTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAA < 1:620960/91‑1 CTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAA < 1:638411/91‑1 TGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATGTCAAACGAATGTATTCATCATTCGTACGATACCGAAT < 1:1185989/91‑1 GGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTA < 2:2447058/66‑1 GGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTA > 1:2447058/1‑66 GTCAATTCTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAATAC < 2:1292451/91‑1 TCAATTTTCAGCACCTTCCAAATGGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAATACA < 2:308778/91‑1 TCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGA < 2:512434/91‑1 ACGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAA > 2:3660941/1‑91 ACGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAA < 1:863790/91‑1 CGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA < 1:3072426/91‑1 CGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA > 2:3312541/1‑91 CGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA > 2:1047495/1‑91 CGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA < 1:762632/91‑1 GAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAAT < 2:125883/91‑1 GAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAAT > 1:2395267/1‑91 ATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAATGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTG > 2:3064645/1‑91 TGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGA > 2:1800339/1‑91 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 1:2268505/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 1:2714769/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 1:264534/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 2:1867753/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 1:2714934/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 2:1655422/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 2:1654772/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 1:30260/91‑1 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 2:1167411/91‑1 TATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACC > 1:1208295/1‑91 ATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCA < 2:1057916/91‑1 TTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAG > 2:241511/1‑91 TTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAG > 1:554517/1‑91 TTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAG > 1:114330/1‑91 CATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT < 2:2539606/91‑1 CTTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2719279‑2719380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaatgtattcATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT < USA300TCH1516_ALE/2719397‑2719308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |