BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2719380	139 (0.730)	6 (0.040)	5/136	NT	4.5%	coding (324/705 nt)	cpnA	Cyclopentanol dehydrogenase
*	?	USA300TCH1516_ALE	= 2719397	138 (0.850)	6 (0.040)	5/136	NT	4.5%	coding (341/705 nt)	cpnA	Cyclopentanol dehydrogenase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 205 total aligned reads displayed.

TATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACAAA  >  USA300TCH1516_ALE/2719307‑2719487

tatCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAatgat                                                                                            <  2:1697737/91‑1 (MQ=255)

tatCTGGTCAAGTTTCAGCACCGGCCAGATTGACACCTCGTGACGTTGATGAAGTATATGAAACGAATGTATTCGGTATCGTACGAatgat                                                                                            <  2:2952196/91‑1 (MQ=255)

   cTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaa                                                                                         >  1:554517‑M2/1‑88 (MQ=255)

   cTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaa                                                                                         >  2:241511‑M2/1‑88 (MQ=255)

    tGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaat                                                                                        <  2:1057916‑M2/91‑5 (MQ=255)

      gTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatac                                                                                      <  1:30260‑M2/91‑7 (MQ=255)

      gTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatac                                                                                      <  1:2714934‑M2/91‑7 (MQ=255)

      gTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatac                                                                                      <  2:1654772‑M2/91‑7 (MQ=255)

      gTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatac                                                                                      <  1:2268505‑M2/91‑7 (MQ=255)

      gTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatac                                                                                      <  2:1167411‑M2/91‑7 (MQ=255)

       tCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaataca                                                                                     >  2:1800339‑M2/1‑84 (MQ=255)

          aTTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattc                                                                                  >  1:2395267‑M2/1‑81 (MQ=255)

           ttttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattcg                                                                                 <  1:762632‑M2/91‑12 (MQ=255)

           ttttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattcg                                                                                 <  1:3072426‑M2/91‑12 (MQ=255)

            tttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattcgt                                                                                >  2:3660941‑M2/1‑79 (MQ=255)

             ttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTc                                                                               >  2:2880740/1‑91 (MQ=255)

              ccAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTcc                                                                              <  2:2346651/90‑1 (MQ=255)

                aGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCct                                                                            >  2:559692/1‑91 (MQ=255)

                 gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                                           >  2:473051/1‑91 (MQ=255)

                 gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                                           >  1:2701407/1‑91 (MQ=255)

                  cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                                          >  1:1648181/1‑91 (MQ=255)

                  cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                                          >  1:2306920/1‑91 (MQ=255)

                  cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                                          >  1:3577423/1‑91 (MQ=255)

                   aCCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctc                                                                         <  1:3600000/91‑1 (MQ=255)

                    ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                                        <  1:3385008/91‑1 (MQ=255)

                    ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                                        <  2:2141864/91‑1 (MQ=255)

                      ttCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTa                                                                      <  1:3429505/91‑1 (MQ=255)

                       tCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAg                                                                     >  1:3620646/1‑91 (MQ=255)

                             ttGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAt                                                               <  2:624838/91‑1 (MQ=255)

                              tGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATc                                                              <  2:3613640/91‑1 (MQ=255)

                              tGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATc                                                              <  2:3237941/91‑1 (MQ=255)

                               gACACCTCGTGACGTTGAAGAAGTATATCAAACGCATGTATTCGGTATCGTACGAACGATGAATACATTCGTACCTCTCTTAGAAAAATCt                                                             >  2:19659/1‑91 (MQ=255)

                               gACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCt                                                             <  1:3782780/91‑1 (MQ=255)

                                   ccTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaac                                                         <  1:1491807/91‑1 (MQ=255)

                                         gACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtg                                                   <  1:302392/91‑1 (MQ=255)

                                         gACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtg                                                   >  2:3853433/1‑91 (MQ=255)

                                         gACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtg                                                   >  1:2075126/1‑91 (MQ=255)

                                          aCGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgt                                                  <  1:1127074/91‑1 (MQ=255)

                                           cGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgtt                                                 >  2:1014165/1‑91 (MQ=255)

                                           cGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTAAAAAACTTAGAAAAATCTGAACAACCtgtt                                                 <  2:1306547/91‑1 (MQ=255)

                                              tGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtc                                              >  1:84594/1‑91 (MQ=255)

                                                aagaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtcgt                                            <  2:3199946/91‑1 (MQ=255)

                                                aagaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtcgt                                            <  1:1393130/91‑1 (MQ=255)

                                                 agaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAGAAATCTGAACAACCTGTTgtcgtc                                           >  2:3598577/1‑91 (MQ=255)

                                                 agaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtcgtc                                           >  2:19195/1‑91 (MQ=255)

                                                 agaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtcgtc                                           >  1:2777724/1‑91 (MQ=255)

                                                  gaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCa                                          >  2:3627122/1‑91 (MQ=255)

                                                     gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                                       >  1:2307140/1‑91 (MQ=255)

                                                        tatCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTAt                                    <  2:2050259/91‑1 (MQ=255)

                                                        tatCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTAt                                    >  1:840501/1‑91 (MQ=255)

                                                        tatCAAACGAATGTATTCGGTATCGGACGAATGATGAATACATTCGTCCCTCTCTTAGAAGAAGCTGAACAACCTGTTGTCGTCAACGTAt                                    <  2:1279716/91‑1 (MQ=255)

                                                         atCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATc                                   <  1:3405879/91‑1 (MQ=255)

                                                          tCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCa                                  <  2:2190009/91‑1 (MQ=255)

                                                          tCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCa                                  >  1:133098/1‑91 (MQ=255)

                                                           cAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCaa                                 >  2:2806211/1‑91 (MQ=255)

                                                            aaaCGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAg                                <  1:29497/91‑1 (MQ=255)

                                                             aaCGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGt                               <  2:304420/91‑1 (MQ=255)

                                                              aCGAATGTATTCGGTATCGTACGAATGATGAATACATCCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTg                              >  1:3276665/1‑91 (MQ=255)

                                                                 aaTGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGtt                           >  1:1294909/1‑91 (MQ=255)

                                                                  aTGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGttt                          <  2:2279160/91‑1 (MQ=255)

                                                                   tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTGTGTTTGTCGAGTGTGGACAAGGTGTTGTCGTCAACGTATCAAGTGGTTTa                         >  2:3763116/1‑91 (MQ=255)

                                                                   tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         >  1:9527/1‑91 (MQ=255)

                                                                   tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         >  1:2638772/1‑91 (MQ=255)

                                                                   tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         <  2:175142/91‑1 (MQ=255)

                                                                   tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         >  1:712720/1‑91 (MQ=255)

                                                                   tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         <  1:866753/91‑1 (MQ=255)

                                                                    gTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAGCCTGTTGTCGTCAACGTATCAAGTGGTTTAg                        <  2:2157382/91‑1 (MQ=255)

                                                                    gTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAg                        <  1:1326659/91‑1 (MQ=255)

                                                                     tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         <  1:7265/89‑1 (MQ=255)

                                                                     tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAgg                       >  1:110774/1‑91 (MQ=255)

                                                                      aTTCGGTATCGTACGAATGATgaatacattcgtttgacatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgacca                      <  1:1185989‑M2/91‑71 (MQ=255)

                                                                      aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGt                      >  2:755725/1‑91 (MQ=255)

                                                                      aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGt                      >  2:3403934/1‑91 (MQ=255)

                                                                       ttCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccag                     <  1:620960‑M2/91‑72 (MQ=255)

                                                                       ttCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGtt                     >  2:1402449/1‑91 (MQ=255)

                                                                         cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa                   >  2:2034464/1‑91 (MQ=255)

                                                                         cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa                   >  2:3421727/1‑91 (MQ=255)

                                                                            tATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCAttt                >  1:413908/1‑91 (MQ=255)

                                                                            tATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCAttt                <  2:6990/91‑1 (MQ=255)

                                                                              tCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAGGTGGCTTAGGTTCATTTgg              >  2:323471/1‑91 (MQ=255)

                                                                               cGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTAt                                    >  1:2043694/1‑68 (MQ=255)

                                                                               cGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGa             <  2:2808428/91‑1 (MQ=255)

                                                                               cGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGa             >  2:656062/1‑91 (MQ=255)

                                                                                gTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGaa            >  2:2608303/1‑91 (MQ=255)

                                                                                gTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGaa            <  1:1006827/91‑1 (MQ=255)

                                                                                 tACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAAt           >  1:1740811/1‑91 (MQ=255)

                                                                                  aCGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATg          <  1:594196/91‑1 (MQ=255)

                                                                                   cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATgg         >  1:434347/1‑91 (MQ=255)

                                                                                   cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATgg         >  1:797712/1‑91 (MQ=255)

                                                                                   cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATgg         >  1:353930/1‑91 (MQ=255)

                                                                                   cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATgg         <  1:2474247/91‑1 (MQ=255)

                                                                                    gAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGt        <  2:2132997/91‑1 (MQ=255)

                                                                                     aaTGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGtt       <  1:1852841/91‑1 (MQ=255)

                                                                                       tgatgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTAc     >  2:1485322/1‑91 (MQ=255)

                                                                                       tgatgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTAc     <  2:2342130/91‑1 (MQ=255)

                                                                                         atgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACaa   <  1:1255693/91‑1 (MQ=255)

                                                                                         atgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACaa   <  2:1201432/91‑1 (MQ=255)

                                                                                         atgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACaa   <  2:3072426/91‑1 (MQ=255)

                                                                                          tgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACaaa  <  1:2650071/91‑1 (MQ=255)

                                                                                          tgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACaaa  >  1:2707526/1‑91 (MQ=255)

TATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACAAA  >  USA300TCH1516_ALE/2719307‑2719487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.