| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2756955 = | 176 (0.920) | 20 (0.110) | 10/150 | NT | 10.8% | intergenic (‑476/+43) | opuD_3/nrdG | Glycine betaine transporter OpuD/Anaerobic ribonucleoside‑triphosphate reductase‑activating protein |
| ? | USA300TCH1516_ALE | 2756989 = | 167 (0.940) | intergenic (‑510/+9) | opuD_3/nrdG | Glycine betaine transporter OpuD/Anaerobic ribonucleoside‑triphosphate reductase‑activating protein | |||||
TGTACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2757049‑2756955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > USA300TCH1516_ALE/2756989‑2757077 TGTACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGC > 2:1155993/1‑91TGTACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGC < 1:2339836/91‑1 GTACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCT < 2:2163885/91‑1 GTACAACAATCACTCTCGCATGCGCGTATGACTGAATATATAGTTAGTTGAATATGTATTTGAAGTCAAGGTAACATTCGTTGCCTTGGCT > 2:490327/1‑91 TACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTT < 1:2153248/91‑1 ACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTC > 2:1556865/1‑91 CAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCT < 1:2120606/91‑1 CAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCT < 1:881871/91‑1 CAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCT > 1:2453253/1‑91 ACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGACTTCTAA > 1:759862/1‑91 TATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATT > 2:889172/1‑91 TTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGT > 2:441284/1‑91 TAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTT > 1:569721/1‑91 AGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTG > 1:2880368/1‑91 AGTCAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTAC > 2:223771/1‑91 CAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCTCATGCGAGAGTGATTGTTGTACATC > 1:3612970/1‑91 CAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATC > 1:3170067/1‑91 CAAGGTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATC > 1:3170106/1‑91 GTAACATTCGTTGCCTTGGCTTCTAATACATTTTCAACTAACTATATATTCAATCATGCGCGCATGCGAGAGTGATTGTTGTACATCTATA > 1:3443303/1‑91 GTAACATTCGTTGCCTTGGCTTCTAATACATATTCCACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATA > 1:3443304/1‑91 GTAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATA > 1:3472295/1‑91 GTAACATTCGTTGCCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATA > 1:644114/1‑91 TAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAA > 2:952480/1‑91 TAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAA > 1:3809458/1‑91 TAACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAA > 1:2466270/1‑91 AACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTATATCTATAAT > 1:3723888/1‑91 ACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATG > 1:3030015/1‑91 ACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATG > 1:2380326/1‑91 ACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATG > 1:272597/1‑91 ACATTCGTTGCCTTGGCTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATG > 1:272386/1‑91 gacaTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCTTTGATTTAAAGA < 1:3001823/87‑1 CTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAAC > 1:3388876/1‑91 CTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAAC < 1:952480/91‑1 CTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAAC > 2:3819004/1‑91 TTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACC > 1:1659460/1‑91 TTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACC < 1:3531911/91‑1 TCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCT < 1:2170626/91‑1 TCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCT < 2:3805716/91‑1 CTAATACATATTCAACTAACTATGTATTCAATCATACGCGCATGCGAGAGTGATCGTTGTACATCTATAATGCGTTGATTTAACGAACCTT < 2:3615729/91‑1 CTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGTGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > 2:2042551/1‑91 CTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > 1:3730292/1‑91 CTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT < 2:866912/91‑1 CTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > 2:200375/1‑91 CTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > 1:3730239/1‑91 CTAATACATATTCAACTAACTATATATTCAATCATACACGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > 2:201181/1‑91 TGTACAACAATCACTCTCGCATGCGCGTATGATTGAATATATAGTTAGTTGAATATGTATTAGAAGTCAAGGTAACATTCGTTGCCTTGGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2757049‑2756955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT > USA300TCH1516_ALE/2756989‑2757077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |