BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2756955 =	176 (0.920)	20 (0.110)	10/150	NT	10.8%	intergenic (‑476/+43)	opuD_3/nrdG	Glycine betaine transporter OpuD/Anaerobic ribonucleoside‑triphosphate reductase‑activating protein
*	?	USA300TCH1516_ALE	2756989 =	167 (0.940)	20 (0.110)	10/150	NT	10.8%	intergenic (‑510/+9)	opuD_3/nrdG	Glycine betaine transporter OpuD/Anaerobic ribonucleoside‑triphosphate reductase‑activating protein

Only 100 of 231 total aligned reads displayed.

TATATTTTTATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT  >  USA300TCH1516_ALE/2756899‑2757077

 atatTTTTATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTaa                                                                                         >  1:3679037/1‑91 (MQ=255)

   aatcactctcgcatgcgcgtatgattgaatatatagttagttgaatatgtattAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATa                                                                                       >  2:889172‑M1/54‑91 (MQ=255)

     ttttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTaa                                                                                         <  1:3451572/87‑1 (MQ=255)

     ttttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTaa                                                                                         >  2:3451572/1‑87 (MQ=255)

     ttttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACa                                                                                     >  1:1440803/1‑91 (MQ=255)

     ttttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACa                                                                                     >  2:3091128/1‑91 (MQ=255)

       ttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACata                                                                                   <  1:3186567/91‑1 (MQ=255)

       ttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACata                                                                                   <  2:794350/91‑1 (MQ=255)

       ttATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACata                                                                                   <  1:2115830/91‑1 (MQ=255)

        tataAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAATGAATGTTACCTTGACTTATAATAAatat                                                                                  >  2:256549/1‑91 (MQ=255)

        tataAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACatat                                                                                  <  1:34357/91‑1 (MQ=255)

          taAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTc                                                                                <  2:647558/91‑1 (MQ=255)

          taAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTc                                                                                >  2:820728/1‑91 (MQ=255)

          aaaaGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTc                                                                                <  2:2323262/90‑1 (MQ=255)

            aaGAATTGCTTTTATTAACTTTCAATTATGTACCAAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaa                                                                              <  2:2089962/91‑1 (MQ=255)

               aaTTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaacta                                                                           >  1:2924215/1‑91 (MQ=255)

               aaTTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaacta                                                                           <  1:396404/91‑1 (MQ=255)

                aTTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaactaa                                                                          <  1:3659824/91‑1 (MQ=255)

                aTTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaactaa                                                                          <  1:3658948/91‑1 (MQ=255)

                 ttGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaactaac                                                                         <  2:2330492/91‑1 (MQ=255)

                 ttGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaactaac                                                                         <  1:3254447/91‑1 (MQ=255)

                  tGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCaactaact                                                                        >  2:2905687/1‑91 (MQ=255)

                    cTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACtat                                                                      >  1:3174314/1‑91 (MQ=255)

                    cTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACtat                                                                      >  1:777169/1‑91 (MQ=255)

                     ttttATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACtata                                                                     >  1:2384578/1‑91 (MQ=255)

                     ttttATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACtata                                                                     >  1:1185154/1‑91 (MQ=255)

                         attaACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATAtt                                                                 <  1:6137/91‑1 (MQ=255)

                         attaACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATAtt                                                                 >  1:1868/1‑91 (MQ=255)

                           taACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCa                                                               <  1:201945/91‑1 (MQ=255)

                                  cAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATAc                                                        >  1:2180864/1‑91 (MQ=255)

                                     ttATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATAcgcg                                                     <  2:2875555/91‑1 (MQ=255)

                                     ttATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATAcgcg                                                     >  2:896775/1‑91 (MQ=255)

                                      tATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACgcgc                                                    >  2:1393478/1‑91 (MQ=255)

                                      tATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACgcgc                                                    <  2:1023410/91‑1 (MQ=255)

                                        tGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCAt                                                  >  1:3748833/1‑91 (MQ=255)

                                         gTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATg                                                 >  1:554584/1‑91 (MQ=255)

                                         gTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATg                                                 <  1:1503421/91‑1 (MQ=255)

                                         gTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATg                                                 <  1:1504044/91‑1 (MQ=255)

                                           acctaacctaAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCg                                               <  1:13566/91‑1 (MQ=255)

                                             ctaacctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCgag                                             >  1:2498273/1‑91 (MQ=255)

                                              taacctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCgaga                                            <  2:2950550/91‑1 (MQ=255)

                                              taacctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCgaga                                            <  1:1154715/91‑1 (MQ=255)

                                               aacctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGagag                                           <  2:3818564/91‑1 (MQ=255)

                                               aacctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGagag                                           <  1:1652064/91‑1 (MQ=255)

                                                acctaaATAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGt                                          <  1:1942890/91‑1 (MQ=255)

                                                acctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGt                                          >  2:3202599/1‑91 (MQ=255)

                                                acctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGt                                          <  1:2754936/91‑1 (MQ=255)

                                                  ctaaAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGa                                        <  2:2180864/91‑1 (MQ=255)

                                                    aaaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAtt                                      >  2:1445199/1‑91 (MQ=255)

                                                    aaaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAtt                                      <  2:1319117/91‑1 (MQ=255)

                                                    aaaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAtt                                      >  2:1988610/1‑91 (MQ=255)

                                                    aaaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAtt                                      >  2:3722692/1‑91 (MQ=255)

                                                    aaaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAtt                                      <  1:72982/91‑1 (MQ=255)

                                                    aaaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAtt                                      >  1:3825023/1‑91 (MQ=255)

                                                     aaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAttg                                     >  1:1670618/1‑91 (MQ=255)

                                                     aaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAttg                                     >  2:1543870/1‑91 (MQ=255)

                                                     aaaaGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAttg                                     >  2:504896/1‑91 (MQ=255)

                                                      ttagaagtcaaggtaacattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAttgt                                    >  2:441284‑M2/37‑91 (MQ=255)

                                                       tagaagtcaaggtaacattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAttgtt                                   >  1:569721‑M2/36‑91 (MQ=255)

                                                        AGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGAttgttg                                  <  1:881871‑M1/91‑1 (MQ=255)

                                                          AAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTa                                <  1:2153248‑M1/91‑1 (MQ=255)

                                                           AGCCAAGGCAACGAATGTTACCTTGACTTCAAATACATATTCAACTAACTATATATTCAGTCATACGCGCATGCGAGAGTGATTGTTGTAc                               >  2:490327‑M1/1‑91 (MQ=255)

                                                            GCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACa                              <  1:2339836‑M1/91‑1 (MQ=255)

                                                            GCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACa                              >  2:1155993‑M1/1‑91 (MQ=255)

                                                             ccAAGGCAACGAATGTTACCTTGACTTCTCATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGCTGTACAt                             >  2:1890388/1‑91 (MQ=255)

                                                             ccAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATTATACGCGCATGCGAGAGTGATTGTTGTACAt                             >  2:3241980/1‑91 (MQ=255)

                                                             ccAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACAt                             >  2:1573653/1‑91 (MQ=255)

                                                              caaggtaacattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATc                            >  1:3170067‑M2/29‑91 (MQ=255)

                                                              cAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATc                            <  1:1712003/91‑1 (MQ=255)

                                                              cAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATc                            >  1:3502615/1‑91 (MQ=255)

                                                               aaGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAAGTATATATTGAATTATACGCGCATGCGAGAGTGATTGTTGTACATCt                           <  1:3091128/91‑1 (MQ=255)

                                                                aGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCta                          <  1:3295483/91‑1 (MQ=255)

                                                                aGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCta                          >  1:2963973/1‑91 (MQ=255)

                                                                  gtaacattcgttgccttggcttctAATACATATTCCACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCtata                        >  1:3443304‑M2/25‑91 (MQ=255)

                                                                  gCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCtata                        >  2:2506797/1‑91 (MQ=255)

                                                                   taacattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATaa                       >  2:952480‑M2/24‑91 (MQ=255)

                                                                   taacattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATaa                       >  1:2466270‑M2/24‑91 (MQ=255)

                                                                    aacattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTATATCTATAAt                      >  1:3723888‑M2/23‑91 (MQ=255)

                                                                    aaCGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAAt                      <  2:1697500/91‑1 (MQ=255)

                                                                     acattcgttgccttggcttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATg                     >  1:272386‑M2/22‑91 (MQ=255)

                                                                     aCGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTAc                               <  2:2631364/81‑1 (MQ=255)

                                                                     aCGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTAc                               >  1:2631364/1‑81 (MQ=255)

                                                                      cGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGc                    >  2:19738/1‑91 (MQ=255)

                                                                       gattGTTACCTTGACTTCTAATACATATTCAACTCACTATATATTCAATCCTACGCGCATGCGCGCGTGATTGTTGTACACCTATAATCCg                   >  2:1733084/4‑91 (MQ=255)

                                                                       gAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCg                   >  1:2829643/1‑91 (MQ=255)

                                                                       gAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCg                   >  2:2037015/1‑91 (MQ=255)

                                                                       gAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCg                   <  1:798249/91‑1 (MQ=255)

                                                                        aaTGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGt                  >  1:36920/1‑91 (MQ=255)

                                                                        aaTGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGt                  <  2:3849890/91‑1 (MQ=255)

                                                                        aaTGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTACAATGCGt                  <  2:37731/91‑1 (MQ=255)

                                                                        aaTGTTACCCTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGt                  >  1:1955653/1‑91 (MQ=255)

                                                                         aTGTTACCTTGACTTCT‑ATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTg                <  1:323125/91‑1 (MQ=255)

                                                                           gTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGa               >  2:3512391/1‑91 (MQ=255)

                                                                           gTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGa               <  2:2025533/91‑1 (MQ=255)

                                                                           gTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGa               >  1:3016474/1‑91 (MQ=255)

                                                                              aCCTTGACTTCCAATACATATTCAACTACCAATATATTCACTCATACGCGCATGCGTGAGTGACTGTTGTGCATCTATAATGCGTTCAttt            >  2:3654231/1‑91 (MQ=255)

                                                                               ccTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTa           >  2:2262093/1‑91 (MQ=255)

                                                                                     cttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAAc     <  1:952480‑M2/86‑1 (MQ=255)

                                                                                      ttctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAAcc    <  1:3531911‑M2/87‑1 (MQ=255)

                                                                                        ctAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCtt  >  1:3730292‑M2/3‑91 (MQ=255)

TATATTTTTATAAAGAATTGCTTTTATTAACTTTCAATTATGTACCTAACCTAAAAAGAAGCCAAGGCAACGAATGTTACCTTGACTTCTAATACATATTCAACTAACTATATATTCAATCATACGCGCATGCGAGAGTGATTGTTGTACATCTATAATGCGTTGATTTAAAGAACCTT  >  USA300TCH1516_ALE/2756899‑2757077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.