| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2829245 = | 179 (0.940) | 19 (0.110) | 11/150 | NT | 10.7% | coding (126/1053 nt) | icaC | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein |
| ? | USA300TCH1516_ALE | 2829269 = | 151 (0.850) | coding (150/1053 nt) | icaC | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein | |||||
AGGTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2829339‑2829245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACACG > USA300TCH1516_ALE/2829269‑2829358 AGGTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAA > 2:2500896/1‑91AGGTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAA < 1:908008/91‑1 GGTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAAT > 1:1619586/1‑91 GTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATT > 1:1810329/1‑91 GTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACC‑AAAATCACAATATTACGAAT‑GTAAAATTG < 1:337421/91‑1 TGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTG < 1:844299/91‑1 TGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTG < 1:2809369/91‑1 TGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTG < 1:2809351/91‑1 TGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATTTTAC‑ATTCGTAATATTGTGATTTTT < 2:527783/91‑1 GTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATTTTAC‑ATTCGTAATATTGTGATTTTTGG < 1:2808159/91‑1 GTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTT > 1:1037692/1‑91 TCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTA > 1:148829/1‑91 CAGTAACTGTGACAAGATAATAAAGCAAGGTGTACGAAAAATCACAATTTTACATTC‑GTAATATTGTGATTTTTGGTACACCTTGCTTTAT < 2:2878229/91‑1 GATAATAAAGCAAGGTGTACCAAAAATCACAATTTTACATTC‑GTAATATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTT > 2:148829/1‑91 CACAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGT > 1:504651/1‑91 ACAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACAACTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTC > 1:3280431/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACTCAAAAGTCA > 2:332630/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCA > 2:332629/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCA > 2:489445/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCA > 2:489676/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCA > 1:2008941/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCA > 1:3229395/1‑91 CAATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCA > 1:3229382/1‑91 AATATTACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCAC > 1:2447992/1‑91 TACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATA > 1:3754413/1‑91 TACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATA > 1:2140785/1‑91 TACGAAT‑GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATA > 1:3219207/1‑91 GTAAAATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTT > 1:3745113/1‑91 ATTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTA > 1:2132346/1‑91 TTGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTAC > 1:255660/1‑91 TGTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACA > 1:972074/1‑91 GTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACAC < 1:1602670/91‑1 GTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACAC > 1:919462/1‑91 GTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACAC < 1:2440166/91‑1 GTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAG > 1:1769740/1‑67 GTGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAG < 2:1769740/67‑1 TGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACACG < 2:1802368/91‑1 TGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACACG < 2:972074/91‑1 AGGTGACTTTTTGGTAATTCAAGGTTGTCAGTAACTGTGACAAGATAATAAAGCAAGGTGTACCAAAAATCACAATATTACGAAT‑GTAAAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2829339‑2829245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtGATTTTTGGTACACCTTGCTTTATTATCTTGTCACAGTTACTGACAACCTTGAATTACCAAAAAGTCACCTATAGATACTTAACTACACG > USA300TCH1516_ALE/2829269‑2829358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |