| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2830738 | 176 (0.920) | 9 (0.050) | 8/144 | NT | 5.0% | coding (1927/2046 nt) | lipA_2 | Lipase 1 |
| ? | USA300TCH1516_ALE | = 2830760 | 184 (1.070) | coding (1905/2046 nt) | lipA_2 | Lipase 1 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2830642‑2830738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaaACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < USA300TCH1516_ALE/2830760‑2830674 GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCC < 2:3051009/91‑1GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCC < 2:3050951/91‑1GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCC > 2:1121725/1‑91 CTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCT > 2:1476624/1‑91 CTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCT < 1:816034/91‑1 CTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCT < 1:298153/91‑1 TTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTA < 1:1207101/91‑1 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC < 1:1516591/91‑1 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC < 2:635530/91‑1 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC < 2:1500876/91‑1 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC > 1:784472/1‑91 TTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTAC < 1:1517345/91‑1 TTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACA < 2:48160/91‑1 TTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACA > 2:316446/1‑91 TTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACA > 2:312812/1‑91 TTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACA < 1:207664/91‑1 TTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACA > 2:1157948/1‑91 TCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAA > 2:733961/1‑91 TCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAA > 2:3674023/1‑91 TCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAA > 1:2669615/1‑91 TCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAA > 1:3131188/1‑91 CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA > 1:2838446/1‑91 CAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA > 2:500314/1‑91 AATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTT < 2:691795/91‑1 AATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTT < 2:692955/91‑1 ATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTT < 1:2891327/91‑1 GATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGT < 1:2605128/91‑1 ATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGTA < 1:2850618/91‑1 TGCTAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGTAG < 1:3003648/91‑1 CCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGA < 2:3678453/91‑1 TAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCT < 2:3163152/91‑1 AACTGTCTTGTCCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACA < 1:2603057/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 2:2561477/91‑1 CCTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGC < 1:3005598/91‑1 CTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCA < 1:1723483/91‑1 CTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCA > 1:3229180/1‑91 CTACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCA < 1:2763492/91‑1 TACAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGCCAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCAT > 2:3661495/1‑91 CAAAACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < 1:3634052/91‑1 GCTTTTCAGTTTTCACTAAATCGTCTGCTAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2830642‑2830738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaaACATGATTGGGATCATGTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGATTTTTGGCATCA < USA300TCH1516_ALE/2830760‑2830674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |