BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2830738	176 (0.920)	9 (0.050)	8/144	NT	5.0%	coding (1927/2046 nt)	lipA_2	Lipase 1
*	?	USA300TCH1516_ALE	= 2830760	184 (1.070)	9 (0.050)	8/144	NT	5.0%	coding (1905/2046 nt)	lipA_2	Lipase 1
Rejected: Frequency below/above cutoff threshold.

Only 100 of 219 total aligned reads displayed.

TAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACG  >  USA300TCH1516_ALE/2830670‑2830850

tAAATGATGCCAAACATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGt                                                                                            <  2:1492727/91‑1 (MQ=255)

tAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGt                                                                                            <  1:451754/91‑1 (MQ=255)

    tgatgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttg                                                                                        <  1:3634052‑M2/91‑5 (MQ=255)

      atgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGGCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgta                                                                                      >  2:3661495‑M2/1‑85 (MQ=255)

       tgCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtag                                                                                     >  1:3229180‑M2/1‑84 (MQ=255)

        gCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtagg                                                                                    <  1:3005598‑M2/91‑9 (MQ=255)

          cAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCg                                                                                  >  1:2806723/1‑91 (MQ=255)

           aaaaaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGGTTTGTAGGCGt                                                                                 >  1:1065949/1‑91 (MQ=255)

           aaaaaTCTTGTAATTCTTCTCTTGTGCGCACTCTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGt                                                                                 >  2:3803279/1‑91 (MQ=255)

              aaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCAc                                                                              <  2:2516284/91‑1 (MQ=255)

              aaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCAc                                                                              >  1:3094024/1‑91 (MQ=255)

              aaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCAc                                                                              >  2:2407146/1‑91 (MQ=255)

              aaTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAACCATGTCTTGTAGGCGTCAc                                                                              >  2:2562866/1‑91 (MQ=255)

               aTCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACt                                                                             >  1:1562749/1‑91 (MQ=255)

                 cTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCATTCATGTTTTGTAGGCGTCACTTg                                                                           <  2:3315399/91‑1 (MQ=255)

                 cTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTg                                                                           <  2:499774/91‑1 (MQ=255)

                 cTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTg                                                                           >  2:3388844/1‑91 (MQ=255)

                  ttGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGc                                                                          >  1:3456433/1‑91 (MQ=255)

                   tGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGcc                                                                         >  1:406943/1‑91 (MQ=255)

                     tAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaa                                                                       >  1:3439760/1‑91 (MQ=255)

                     tAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaa                                                                       <  2:1229453/91‑1 (MQ=255)

                      aaTTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCaaa                                                                      >  1:2325881/1‑91 (MQ=255)

                          cttctCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGcc                                                                  <  1:3161878/91‑1 (MQ=255)

                           ttctCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCt                                                                 <  2:1707775/91‑1 (MQ=255)

                             ctctTGTGCGCACTGTATCAGAACTGTCTTGTCTTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttt                                                               <  1:3177676/91‑1 (MQ=255)

                             ctctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttt                                                               <  2:2167382/91‑1 (MQ=255)

                              tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                                              >  1:542335/1‑91 (MQ=255)

                              tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                                              <  1:2909481/91‑1 (MQ=255)

                              tctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCtttt                                                              <  1:2073117/91‑1 (MQ=255)

                               ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                                             <  2:2482793/91‑1 (MQ=255)

                               ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                                             <  2:3512672/91‑1 (MQ=255)

                               ctTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCttttt                                                             >  1:2178631/1‑91 (MQ=255)

                                ttGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTg                                                            >  2:588847/1‑91 (MQ=255)

                                  gtgCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGaa                                                          >  2:2739921/1‑91 (MQ=255)

                                   tgCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAAt                                                         <  1:234329/91‑1 (MQ=255)

                                      gcACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAAtttt                                                      <  2:2641615/91‑1 (MQ=255)

                                       cACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTa                                                     <  2:657813/91‑1 (MQ=255)

                                       cACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTa                                                     >  2:1653001/1‑91 (MQ=255)

                                        aCTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTAt                                                    >  2:1778759/1‑91 (MQ=255)

                                          tGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                                                  <  2:3798035/91‑1 (MQ=255)

                                          tGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                                                  <  2:2950746/91‑1 (MQ=255)

                                          tGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                                                  <  2:2275935/91‑1 (MQ=255)

                                          tGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                                                  >  2:1973200/1‑91 (MQ=255)

                                          atggtCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCt                                                  <  2:288841/87‑1 (MQ=255)

                                            tATCAGAACTGTGTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGt                                                <  2:3225950/91‑1 (MQ=255)

                                            tATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGt                                                <  2:1619656/91‑1 (MQ=255)

                                            tATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGt                                                <  2:3579614/91‑1 (MQ=255)

                                            tATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGt                                                >  1:2449167/1‑91 (MQ=255)

                                            tATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGt                                                <  1:1187196/91‑1 (MQ=255)

                                             aTCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTc                                               >  2:1268293/1‑91 (MQ=255)

                                              tCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCg                                              <  1:3627493/91‑1 (MQ=255)

                                              tCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCg                                              >  1:2628581/1‑91 (MQ=255)

                                                aGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaatta                                            <  2:3163152‑M2/91‑49 (MQ=255)

                                                aGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCt                                            >  2:249425/1‑91 (MQ=255)

                                                aGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCt                                            <  1:2278971/91‑1 (MQ=255)

                                                   aCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtttt                                         <  2:2358914/91‑1 (MQ=255)

                                                   aCTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCtttt                                         >  1:681737/1‑91 (MQ=255)

                                                    cTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTg                                        <  2:2845416/91‑1 (MQ=255)

                                                     tGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGt                                       >  1:3342156/1‑91 (MQ=255)

                                                     tGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGt                                       >  1:902971/1‑91 (MQ=255)

                                                      gTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGta                                      >  1:2595262/1‑91 (MQ=255)

                                                      gTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGta                                      <  2:1039153/91‑1 (MQ=255)

                                                         ttGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATaa                                   >  1:624842/1‑91 (MQ=255)

                                                         ttGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATaa                                   >  2:1403767/1‑91 (MQ=255)

                                                           gTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGc                                 >  2:2299293/1‑91 (MQ=255)

                                                            tCCTACAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttgg                                <  2:3678453‑M2/91‑61 (MQ=255)

                                                            tCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCt                                <  1:3718531/91‑1 (MQ=255)

                                                            tCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCt                                <  2:3424687/91‑1 (MQ=255)

                                                             ccTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCtt                               >  1:2450375/1‑91 (MQ=255)

                                                              cTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTg                              >  1:1235859/1‑91 (MQ=255)

                                                               tACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGa                             >  2:3073429/1‑91 (MQ=255)

                                                               tACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGa                             >  1:773439/1‑91 (MQ=255)

                                                                aCAAAGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatc                            <  1:2605128‑M2/91‑65 (MQ=255)

                                                                aCAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGAt                            <  2:3251248/91‑1 (MQ=255)

                                                                 cAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGAtt                           <  1:1828483/91‑1 (MQ=255)

                                                                  aaaGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatcat                          <  1:2891327‑M2/91‑67 (MQ=255)

                                                                  aaaGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTa                          <  2:2763492/91‑1 (MQ=255)

                                                                  aaaGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTa                          >  2:2036995/1‑91 (MQ=255)

                                                                   aaGTCAACATGATCCCAATCATGTtttgtaggacaagacagttctgatacagtgcgcacaagagaagaattacaagatttttggcatcatt                         <  2:692955‑M2/91‑68 (MQ=255)

                                                                     gTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAAt                       <  2:3747483/91‑1 (MQ=255)

                                                                     gTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAAt                       <  1:3803279/91‑1 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     <  2:2059060/91‑1 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     >  2:3245603/1‑91 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     <  1:82727/91‑1 (MQ=255)

                                                                       cAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATgg                     <  1:26776/91‑1 (MQ=255)

                                                                        aaCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGa                    >  2:3077278/1‑91 (MQ=255)

                                                                         aCATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGAt                   >  1:3675666/1‑91 (MQ=255)

                                                                           aTGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGt                 <  1:1132893/91‑1 (MQ=255)

                                                                             gATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTg               >  1:3001260/1‑91 (MQ=255)

                                                                                cccAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTgaga            <  2:2718245/91‑1 (MQ=255)

                                                                                cccAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTgaga            <  2:2178754/91‑1 (MQ=255)

                                                                                 ccAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGagaa           <  1:2721153/91‑1 (MQ=255)

                                                                                  cAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGagaag          <  1:2161937/91‑1 (MQ=255)

                                                                                    aTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAgaagaa        <  1:1476624/91‑1 (MQ=255)

                                                                                    aTCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAgaagaa        <  2:784472/91‑1 (MQ=255)

                                                                                         gTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAAc   >  2:152261/1‑91 (MQ=255)

                                                                                         gTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAAc   <  1:925718/91‑1 (MQ=255)

                                                                                         gTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAAc   >  2:3861967/1‑91 (MQ=255)

                                                                                          ttttGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACg  <  2:3272182/91‑1 (MQ=255)

                                                                                          ttttGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACg  >  1:1746344/1‑91 (MQ=255)

TAAATGATGCCAAAAATCTTGTAATTCTTCTCTTGTGCGCACTGTATCAGAACTGTCTTGTCCTACAAAGTCAACATGATCCCAATCATGTTTTGTAGGCGTCACTTGCCAAATGCCTTTTTGAATTTTATCTGTCGCTTTTGTATAAGCTTGATTAAATGGATGTTGAGAAGAAATAACG  >  USA300TCH1516_ALE/2830670‑2830850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.