| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 179 (0.940) | 17 (0.100) | 10/150 | NT | 9.2% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:1049485/91‑1ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC > 1:3119798/1‑91 tggGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 2:1372847/88‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:2004084/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 2:1725663/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT > 2:1486518/1‑91 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 1:3586211/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT > 1:2640151/1‑91 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 2:1186297/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 2:3105765/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 2:32359/91‑1 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 2:743009/91‑1 GTTTCATCGAAGATGATAAACTTGTCCAGCGTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 2:1101280/91‑1 TTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGA > 1:3847674/1‑91 AAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAA > 1:3828047/1‑91 AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACT > 2:2097587/1‑91 AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAACCTTTAGATTGTCAAACTAAGCTCGACAAGTTTATCATCTTCGATGAAACT > 2:1895800/1‑91 AAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTC > 1:1826723/1‑91 AGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCA > 1:2487336/1‑91 GCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCAT > 1:2427250/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 1:3002266/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 1:2921961/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATATTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 1:3266284/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 2:795665/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 1:2339283/1‑91 TTGGTCTCTTTGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 2:1011276/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 2:526202/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 1:1444532/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTT‑TAACTCTTTAGATTGTCAAATTACGCTGGACAAGTTTATCATCTTCGATGCAACTCATAAATc > 2:252876/1‑90 TGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATA > 2:2047089/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 2:1251677/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA > 1:1201568/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA > 1:175793/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:1339017/91‑1 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA > 2:1465112/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:1196164/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 2:196651/1‑91 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA < 1:2715390/91‑1 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA < 1:2715432/91‑1 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:2175061/1‑91 TTTTTTATTTTTCTTTAGTTTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:1716670/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:1591183/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:1590958/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:654225/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:2127678/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 2:328290/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 2:2585042/91‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 1:995855/91‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 2:2585011/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:1773153/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:1387944/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:2386134/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:1388955/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 2:1063340/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 2:1063377/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:2510492/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:3785623/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:13050/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:13315/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:2510392/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:1542037/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:1717274/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCAGCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 1:1717940/91‑1 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |