BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	179 (0.940)	17 (0.100)	10/150	NT	9.2%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	17 (0.100)	10/150	NT	9.2%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein

Only 100 of 215 total aligned reads displayed.

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

tataGAACACCATTGGAAGTATTTATGAGTTTCGTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAgg                                                                                      <  1:3447625/91‑1 (MQ=14)

tataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAgg                                                                                      >  2:788286/1‑91 (MQ=31)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    >  2:2590059/1‑91 (MQ=33)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   >  2:2019862/1‑91 (MQ=34)

     aaCACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgagaga                                                                                 <  1:2222386/91‑1 (MQ=37)

      acacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAt                                                                                <  1:3691491/91‑1 (MQ=38)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:1168465/1‑91 (MQ=39)

       cacCATGGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               <  1:2514672/91‑1 (MQ=255)

        acCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTg                                                                              >  1:2363184/1‑91 (MQ=40)

         ccATTGGAAGTATATATGAGTTTCATCGAAGATGATAAACTTGACCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGa                                                                             <  1:3881532/91‑1 (MQ=255)

          cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGaa                                                                            >  1:416577/1‑91 (MQ=255)

           aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAAt                                                                           <  1:1922791/91‑1 (MQ=255)

            ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          <  1:586267/91‑1 (MQ=255)

            ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          <  2:2426851/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  2:1017268/91‑1 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGCGATTGAATCAt                                                                        >  1:891018/1‑91 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGAAAAAAAAAAAAGGAGAGATTGAATCAt                                                                        <  2:3270524/91‑1 (MQ=17)

               agaatATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATg                                                                       <  1:1377314/87‑1 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      <  2:3202376/91‑1 (MQ=255)

                 aGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGaa                                                                     <  1:2495786/91‑1 (MQ=255)

                 aGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGaa                                                                     >  1:1483740/1‑91 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAATGGAGAGATTGAATCATGAAAt                                                                   >  1:1141016/1‑91 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  1:1842363/91‑1 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  1:3799386/91‑1 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  2:2871270/1‑91 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 >  2:565794/1‑91 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 >  1:1335566/1‑91 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               >  2:2662401/1‑91 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               >  1:1081814/1‑91 (MQ=255)

                        aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTaga                                                              >  1:3087570/1‑91 (MQ=255)

                        aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTaga                                                              >  1:357285/1‑91 (MQ=255)

                         tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             >  1:2035475/1‑91 (MQ=255)

                         tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             >  1:2029233/1‑91 (MQ=255)

                           aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  2:2157100/91‑1 (MQ=255)

                           aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  2:2157055/91‑1 (MQ=255)

                           aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  1:1951127/91‑1 (MQ=255)

                            gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAAt                                                          >  2:1291816/1‑91 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       <  1:1002851/91‑1 (MQ=255)

                                cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGt                                                      <  2:416577/91‑1 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  2:269607/77‑1 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  1:269607/1‑77 (MQ=255)

                                   cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaa                                                   >  1:3140698/1‑91 (MQ=255)

                                     aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTAATTAAAAAGGGGAGATTGAAACATGAAATTTAGAGAATTAGTaaaaa                                                 >  2:1502190/1‑90 (MQ=21)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  1:515680/1‑91 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAATCaagag                                            >  2:189150/1‑88 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  1:1713256/1‑91 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            <  1:997439/91‑1 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCat                                           >  2:1382579/1‑91 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCat                                           >  2:2755437/1‑91 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAAAAAAAATAAAACAATCat                                           <  2:3656956/91‑1 (MQ=21)

                                            tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaa                                                   <  1:2821500/82‑1 (MQ=255)

                                             aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCatat                                         >  2:453437/1‑91 (MQ=255)

                                              aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:1754137/1‑91 (MQ=255)

                                               aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGa                                       >  1:229454/1‑91 (MQ=255)

                                                 ttGTCCATCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAgg                                     <  2:3435670/91‑1 (MQ=255)

                                                   gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAt                                   >  2:2999452/1‑91 (MQ=255)

                                                   gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAt                                   >  1:3033906/1‑91 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 >  1:2663561/1‑91 (MQ=255)

                                                     ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 >  2:264355/1‑91 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTTGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:2568600/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  2:3772229/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  2:1637386/91‑1 (MQ=255)

                                                        gCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaa                              >  1:2754986/1‑91 (MQ=255)

                                                         cTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaa                             <  1:3160241/91‑1 (MQ=255)

                                                            aaTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAt                          >  1:3424729/1‑91 (MQ=255)

                                                            aaTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAt                          >  1:3743245/1‑91 (MQ=255)

                                                             aTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         <  2:1796324/91‑1 (MQ=255)

                                                               ttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTg                       >  2:2130645/1‑91 (MQ=255)

                                                               ttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTg                       >  1:2951678/1‑91 (MQ=255)

                                                               ttGACAATCTAAAGATTTATAAAAAAAGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTg                       >  2:2212704/1‑91 (MQ=255)

                                                                tGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGa                      >  2:620405/1‑91 (MQ=255)

                                                                 gACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGAc                     <  1:2875529/91‑1 (MQ=255)

                                                                  aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    >  1:933642/1‑91 (MQ=255)

                                                                   cAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTg                   >  2:2683653/1‑91 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 <  2:1358810/91‑1 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 <  1:1209045/91‑1 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 >  1:3392251/1‑91 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 >  2:351253/1‑91 (MQ=255)

                                                                      tCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTaa                >  2:1250706/1‑91 (MQ=255)

                                                                      tCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTaa                <  1:2590059/91‑1 (MQ=255)

                                                                      tCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCAAATGAGGATTTGAAAAATTTGACTGTaa                >  1:3819252/1‑91 (MQ=255)

                                                                       cTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAAc               >  1:101614/1‑91 (MQ=255)

                                                                       cTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAAc               >  1:2271892/1‑91 (MQ=255)

                                                                        tAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACt              <  2:1963574/91‑1 (MQ=255)

                                                                         aaaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACtt             <  2:331167/91‑1 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaa                             <  2:2107342/74‑1 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaa                             >  1:2107342/1‑74 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaa                             >  1:2897430/1‑74 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            >  2:1927652/1‑91 (MQ=255)

                                                                           aGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTgg           >  2:2729698/1‑91 (MQ=255)

                                                                             aTTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGta         <  2:95478/91‑1 (MQ=39)

                                                                              tttATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGtat        <  1:2005561/91‑1 (MQ=38)

                                                                                tataAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATaa      >  2:2530853/1‑91 (MQ=35)

                                                                                tataAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATaa      <  2:2316445/91‑1 (MQ=35)

                                                                                 ataACAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAAc     <  1:3226890/91‑1 (MQ=17)

                                                                                  taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    >  2:1143082/1‑91 (MQ=33)

                                                                                  taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    <  2:2906659/91‑1 (MQ=33)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:2629591/1‑91 (MQ=32)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   <  1:2530853/91‑1 (MQ=32)

                                                                                    aaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTc  >  1:715198/1‑91 (MQ=31)

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.