| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 179 (0.940) | 17 (0.100) | 10/150 | NT | 9.2% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
Only 100 of 249 total aligned reads displayed.
GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT > USA300TCH1516_ALE/2862984‑2863164 | gTTTCATCGAAGATGATAAACTTGTCCAGCGTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 2:1101280‑M1/91‑1 (MQ=255) tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtctc < 1:3380123/91‑1 (MQ=255) cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct < 2:676444/91‑1 (MQ=255) aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt < 2:59674/91‑1 (MQ=255) aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt < 2:579248/91‑1 (MQ=255) tgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaa < 2:867497/91‑1 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa < 2:2642678/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 2:457800/91‑1 (MQ=255) ttGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTa < 1:776114/91‑1 (MQ=255) ttGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTa > 2:3232993/1‑91 (MQ=255) gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATg > 2:1133733/1‑91 (MQ=255) tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg > 2:3741705/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc < 1:2017001/91‑1 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc > 1:3113216/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc < 1:1401329/91‑1 (MQ=255) cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg > 2:3426505/1‑91 (MQ=255) aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGa > 1:2432613/1‑91 (MQ=255) gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa > 1:1043996/1‑91 (MQ=255) cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg > 1:1887812/1‑91 (MQ=255) ttAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc < 2:3366497/91‑1 (MQ=255) ttAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACAGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc < 2:1643984/91‑1 (MQ=255) tAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGca < 2:121506/91‑1 (MQ=255) tAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGca < 1:798572/91‑1 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca < 1:2672911/91‑1 (MQ=255) ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt < 1:447223/91‑1 (MQ=255) tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg > 1:3297529/1‑91 (MQ=255) aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt < 2:3774448/91‑1 (MQ=255) aCAATCTAAAGATTTATAAAAAAGCCGTTGGACTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt > 1:3444993/1‑91 (MQ=255) cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc < 2:3478441/91‑1 (MQ=255) cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc > 1:2805219/1‑91 (MQ=255) aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAt > 2:3591380/1‑91 (MQ=255) aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAt > 1:348555/1‑91 (MQ=255) aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAt < 1:1094942/91‑1 (MQ=255) tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt < 1:3237142/91‑1 (MQ=255) aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt > 1:307732/1‑91 (MQ=255) aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt > 2:3678272/1‑91 (MQ=255) aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATAGAAt < 2:2582067/91‑1 (MQ=255) aGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAtt < 2:1780277/91‑1 (MQ=255) aGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAtt < 1:2063587/91‑1 (MQ=255) ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt < 2:1854868/91‑1 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt < 1:1486518/91‑1 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt > 2:2339266/1‑91 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaa > 1:3828047‑M1/1‑35 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta < 2:2177480/91‑1 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCGTTTCTCTGTGCTCTAAAATCACTATAGCGAAGCACAGTGATCATTGAATTCTGACTTta < 1:3098073/91‑1 (MQ=255) aaGCCGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactc > 1:1826723‑M1/1‑32 (MQ=255) aGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtatata > 2:148773/1‑91 (MQ=255) ccGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcata > 1:3002266‑M1/1‑29 (MQ=255) ccGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcata > 1:2921961‑M1/1‑29 (MQ=255) ccGTTGGTCTCTTCGAAACTACGGCTTTTttataaatatttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcata > 1:3266284‑M1/1‑29 (MQ=255) ccGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAt > 2:3038306/1‑91 (MQ=255) cGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataa > 1:2339283‑M1/1‑28 (MQ=255) gTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa > 1:1994730/1‑91 (MQ=255) gTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa > 2:2093573/1‑91 (MQ=255) ttGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaat > 2:526202‑M1/1‑26 (MQ=255) ttGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa > 1:414813/1‑91 (MQ=255) ttGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa > 2:2032774/1‑91 (MQ=255) ttGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa < 2:1033345/91‑1 (MQ=255) tGGTCTCTTCGAATCTACGGCTTTTCTCTGTGCTATAAAATCAATATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag < 1:3880734/91‑1 (MQ=255) tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag < 2:246754/91‑1 (MQ=255) tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag < 2:2991489/91‑1 (MQ=255) ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGCAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga > 2:133687/1‑91 (MQ=255) ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga > 2:2724613/1‑91 (MQ=255) gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag < 2:280291/91‑1 (MQ=255) gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag < 1:789675/91‑1 (MQ=255) gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag > 1:2514980/1‑91 (MQ=255) ttCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt > 2:280485/1‑91 (MQ=255) ttCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt > 1:3136958/1‑91 (MQ=255) ttCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt < 1:932780/91‑1 (MQ=255) cGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCttt < 2:3282344/91‑1 (MQ=255) gAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTg < 2:757287/91‑1 (MQ=255) aaaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg < 1:647969/91‑1 (MQ=255) cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa > 1:1649098/1‑91 (MQ=255) aCGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttct > 2:1251677‑M1/1‑9 (MQ=255) cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta > 1:1201568‑M1/1‑8 (MQ=255) cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta > 1:175793‑M1/1‑8 (MQ=255) cGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATacac < 2:1367706/91‑1 (MQ=255) cGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATacac < 1:3045850/91‑1 (MQ=255) ggCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca < 1:3770511/40‑1 (MQ=255) ggCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt > 1:2298845/1‑91 (MQ=255) gCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg > 2:147630/1‑91 (MQ=255) cTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa > 2:196651‑M1/1‑5 (MQ=255) cTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa < 1:2715390‑M1/91‑87 (MQ=255) ttttttatttttctttagtttgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac > 2:1716670‑M1/1‑4 (MQ=255) ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac < 1:1591183‑M1/91‑88 (MQ=255) ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac > 1:2127678‑M1/1‑4 (MQ=255) ttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgat < 2:3297529/91‑1 (MQ=255) ttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgat < 2:387063/91‑1 (MQ=255) tttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacc < 1:995855‑M1/91‑89 (MQ=255) tttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacc < 2:2585042‑M1/91‑89 (MQ=255) ttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacct > 2:1063377‑M1/1‑2 (MQ=255) ttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacct > 1:2386134‑M1/1‑2 (MQ=255) ttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacct > 1:1387944‑M1/1‑2 (MQ=255) ttCTCTGTGCTATAAAATCAGTATGGCGAAGCAGAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgatga < 1:3179813/91‑1 (MQ=255) ttCTCTGTGCTATAAAATCAGTATGGCGAAGCAGAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgatga < 1:3176329/91‑1 (MQ=255) tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta < 1:2510392‑M1/91‑91 (MQ=255) tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta < 1:1717274‑M1/91‑91 (MQ=255) tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta < 1:1542037‑M1/91‑91 (MQ=255) tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta < 1:13315‑M1/91‑91 (MQ=255) tttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataaccta < 1:13050‑M1/91‑91 (MQ=255) | GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT > USA300TCH1516_ALE/2862984‑2863164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |