BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	2133 =	7289 (0.610)	380 (0.030)	41/148	NT	5.2%	coding (542/582 nt)	USA300HOU_RS14900	hypothetical protein
*	?	NC_012417	2167 =	7181 (0.650)	380 (0.030)	41/148	NT	5.2%	coding (508/582 nt)	USA300HOU_RS14900	hypothetical protein

Only 100 of 14702 total aligned reads displayed.

TTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAA  >  NC_012417/2043‑2223

TTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCg                                                                                            <  2:3177319‑M2/91‑1 (MQ=255)

TTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCg                                                                                            >  2:1854487‑M2/1‑91 (MQ=255)

 tggaaacataatcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaagGa                                                                                           >  2:2698668‑M1/90‑91 (MQ=255)

 TAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGa                                                                                           >  2:775876‑M2/1‑91 (MQ=255)

   AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGaaa                                                                                         >  2:2765771‑M2/1‑91 (MQ=255)

    aaacataatcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaagGAAAc                                                                                        <  1:1551121‑M1/5‑1 (MQ=255)

    GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAAc                                                                                        >  1:886490‑M2/1‑91 (MQ=255)

         CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAg                                                                                   >  2:1385582‑M2/1‑91 (MQ=255)

         CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAg                                                                                   >  1:3287437‑M2/1‑91 (MQ=255)

         CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAg                                                                                   >  2:3432377‑M2/1‑91 (MQ=255)

           gAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTA                                                                                 >  2:2479761‑M1/1‑91 (MQ=255)

           gAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTA                                                                                 <  1:446705‑M1/91‑1 (MQ=255)

            aGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAG                                                                                >  1:2913786‑M1/1‑91 (MQ=255)

            aGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAG                                                                                <  1:3508365‑M1/91‑1 (MQ=255)

             ggCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGC                                                                               <  2:3310894‑M1/91‑1 (MQ=255)

              gCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCT                                                                              >  1:1951961‑M1/1‑91 (MQ=255)

              gCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCT                                                                              >  2:1244991‑M1/1‑91 (MQ=255)

                tCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGg                                                                            <  1:820163‑M1/91‑2 (MQ=255)

                 gaaCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCg                                                                           <  2:3850400/90‑1 (MQ=255)

                   aCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGc                                                                            >  2:1709153/1‑88 (MQ=255)

                   aCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAt                                                                         <  1:1269839/91‑1 (MQ=255)

                   aCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAt                                                                         <  2:1977289/91‑1 (MQ=255)

                   aCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAt                                                                         <  2:2192874/91‑1 (MQ=255)

                      tCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGgaatcgc                                                                      <  1:1201220‑M1/91‑8 (MQ=255)

                      TCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTcc                                                                      >  1:1412856‑M2/1‑91 (MQ=255)

                        AATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAGCCATAGTAGCTGCGATTCCAg                                                                    <  2:3767171‑M2/91‑1 (MQ=255)

                         ATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGc                                                                   >  1:1814437‑M2/1‑91 (MQ=255)

                          tAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACC‑‑‑‑TAGCTGgaatcgcagctacta                                                              <  2:3038447‑M1/91‑16 (MQ=255)

                          TAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCt                                                                  <  1:284232‑M2/91‑1 (MQ=255)

                           aaaGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACC‑‑‑‑TAGCTGgaatcgcagctactat                                                             <  1:168298‑M1/91‑17 (MQ=255)

                           AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                 <  1:2485921‑M2/91‑1 (MQ=255)

                           AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                 <  1:2990778‑M2/91‑1 (MQ=255)

                            AAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAg                                                                <  1:3576291‑M2/91‑1 (MQ=255)

                                aaTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGttt                                                            <  2:3245200/91‑1 (MQ=255)

                                 aTTGGAATAAATAGTATCTAAAGTACCCCGTATTTAAGATTACATTGTACATCCTTCGAAACC‑‑‑‑TAGCTGgaatcgcagctactatggtttc                                                       <  1:530463‑M1/91‑23 (MQ=255)

                                 aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTc                                                           >  1:2415125/1‑91 (MQ=255)

                                 aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTc                                                           >  1:96038/1‑91 (MQ=255)

                                  ttGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTcc                                                          >  2:620498/1‑91 (MQ=255)

                                     gAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCttt                                                       <  1:3145733/91‑1 (MQ=255)

                                     gAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCttt                                                       >  2:130237/1‑91 (MQ=255)

                                     gAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCttt                                                       >  2:2047912/1‑91 (MQ=255)

                                      aataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCtttt                                                      >  1:222008/1‑91 (MQ=255)

                                       ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTa                                                     <  1:1624479/91‑1 (MQ=255)

                                       ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTa                                                     <  1:1132072/91‑1 (MQ=255)

                                           ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATccc                                                 >  2:3639935/1‑91 (MQ=255)

                                            aacttaaagggcgtagcaaaaaaattagctaaaattgggataaaagGa                                                                                           >  1:364897‑M1/47‑48 (MQ=255)

                                             aGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCaa                                               >  2:3565319/1‑91 (MQ=255)

                                             aGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCaa                                               >  1:2551507/1‑91 (MQ=255)

                                              gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAgg                                                               >  2:2280106/1‑74 (MQ=255)

                                              gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAt                                              >  2:3497555/1‑91 (MQ=255)

                                              gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAt                                              >  1:3359888/1‑91 (MQ=255)

                                              gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAt                                              >  1:1888628/1‑91 (MQ=255)

                                              gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAt                                              <  1:2025234/91‑1 (MQ=255)

                                                  cTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTa                                          <  2:2622090/91‑1 (MQ=255)

                                                   tAAAGTAACCCGTATTTAAGATTGCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAg                                         <  2:2959382/91‑1 (MQ=255)

                                                    aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                        >  1:3794191/1‑91 (MQ=255)

                                                    aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                        >  1:1000057/1‑91 (MQ=255)

                                                    aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                        <  1:13345/91‑1 (MQ=255)

                                                    aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATACTAGCTGCGATTCcagc                                                                   <  1:3871180‑M2/64‑5 (MQ=255)

                                                     aaGTAACCGGTATTTAAGATTACATCCTACATCCTTCGAAACCATAGTAGCTGCGATTCCATCTAGGTTTCCTTTTATCCCAATTTTAGCt                                       <  2:3370305/91‑1 (MQ=255)

                                                     aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                       >  2:1649929/1‑91 (MQ=255)

                                                     aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                       >  1:2697552/1‑91 (MQ=255)

                                                       gTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTaa                                     >  1:668226/1‑91 (MQ=255)

                                                         aaCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtt                                   <  1:2091689/91‑1 (MQ=255)

                                                         aaCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtt                                   >  2:3704565/1‑91 (MQ=255)

                                                         aaCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtt                                   <  2:2896454/91‑1 (MQ=255)

                                                          aCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttt                                  >  2:2833475/1‑91 (MQ=255)

                                                             cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                               >  1:3723508/1‑91 (MQ=255)

                                                              gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                              >  2:494685/1‑91 (MQ=255)

                                                              gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                              <  2:1096054/91‑1 (MQ=255)

                                                                aTTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGc                            <  1:2619370/91‑1 (MQ=255)

                                                                   tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                               <  1:3068782/85‑1 (MQ=255)

                                                                    aaGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACg                        >  2:235855/1‑91 (MQ=255)

                                                                     aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                       >  1:748240/1‑91 (MQ=255)

                                                                     aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                       >  1:2762635/1‑91 (MQ=255)

                                                                       aTTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGccc                     <  2:554662/91‑1 (MQ=255)

                                                                         tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                   <  2:2417759/91‑1 (MQ=255)

                                                                         tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                   >  1:1069751/1‑91 (MQ=255)

                                                                          aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                  >  2:42472/1‑91 (MQ=255)

                                                                          aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                  <  1:2150648/91‑1 (MQ=255)

                                                                          aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                  >  1:1486122/1‑91 (MQ=255)

                                                                             ttGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAG               <  2:855318‑M1/91‑1 (MQ=255)

                                                                              tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTATGCCCTTTAAGT              <  2:2122471‑M1/91‑1 (MQ=255)

                                                                              tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGT              <  2:1782696‑M1/91‑1 (MQ=255)

                                                                              tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGT              <  2:1520697‑M1/91‑1 (MQ=255)

                                                                               gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT             <  2:1455206‑M1/91‑1 (MQ=255)

                                                                               gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT             <  1:3218781‑M1/91‑1 (MQ=255)

                                                                                tACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTT            <  1:2279230‑M1/91‑1 (MQ=255)

                                                                                  cATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTT          <  2:1033756‑M1/91‑1 (MQ=255)

                                                                                  cATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTT          >  1:1753553‑M1/1‑91 (MQ=255)

                                                                                    tCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg        >  1:3436779/1‑91 (MQ=255)

                                                                                     ccTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGc       <  2:2560557/91‑1 (MQ=255)

                                                                                        tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCttt    >  2:1914268/1‑91 (MQ=255)

                                                                                        tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCttt    >  2:1589866/1‑91 (MQ=255)

                                                                                        tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCttt    <  2:1163821/91‑1 (MQ=255)

                                                                                        tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCttt    <  1:2350938/91‑1 (MQ=255)

                                                                                        tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCttt    <  2:926447/91‑1 (MQ=255)

                                                                                         cGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa   >  1:595085/1‑91 (MQ=255)

                                                                                         cGAAACCATAGTAGCTGCGATTCCAGCTAGGACTCCTCTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa   >  2:3106621/1‑91 (MQ=255)

                                                                                          GAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTaa  <  2:696958‑M1/91‑1 (MQ=255)

TTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAA  >  NC_012417/2043‑2223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.