BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	2133 =	7289 (0.610)	380 (0.030)	41/148	NT	5.2%	coding (542/582 nt)	USA300HOU_RS14900	hypothetical protein
*	?	NC_012417	2167 =	7181 (0.650)	380 (0.030)	41/148	NT	5.2%	coding (508/582 nt)	USA300HOU_RS14900	hypothetical protein

Only 100 of 14264 total aligned reads displayed.

TTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGTTTCCAGTT  >  NC_012417/2077‑2258

 tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCt                                                                                            >  1:3036342/1‑91 (MQ=255)

  aagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaagGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCtt                                                                                           >  1:984537‑M1/55‑91 (MQ=255)

   gAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCttt                                                                                          >  1:3193008/1‑91 (MQ=255)

    aataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCt                                                                                            <  1:1904934/88‑1 (MQ=255)

     ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTa                                                                                        >  1:390799/1‑91 (MQ=255)

     ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTa                                                                                        >  2:1473715/1‑91 (MQ=255)

     ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTa                                                                                        <  1:1624479/91‑1 (MQ=255)

        aataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATcc                                                                                     <  1:3755603/91‑1 (MQ=255)

         ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGCTTCCAGCTAGGTTTCCTTTTATccc                                                                                    >  1:3615789/1‑91 (MQ=255)

         ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATccc                                                                                    >  1:1069112/1‑91 (MQ=255)

           aGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCaa                                                                                  >  1:1279377/1‑91 (MQ=255)

              aTCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAttt                                                                               >  1:1689066/1‑91 (MQ=255)

               tCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAtttt                                                                              >  2:23473/1‑91 (MQ=255)

               tCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAtttt                                                                              <  2:1335085/91‑1 (MQ=255)

               tCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAtttt                                                                              >  1:2533934/1‑91 (MQ=255)

                cTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTa                                                                             <  2:864275/91‑1 (MQ=255)

                 tAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAg                                                                            >  2:1274034/1‑91 (MQ=255)

                 tAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATGCCAGCTAGGTTTCCTTTTATCCCAATTTTAg                                                                            <  2:2959648/91‑1 (MQ=255)

                  aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                                           <  1:3469972/91‑1 (MQ=255)

                  aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                                           >  1:2318889/1‑91 (MQ=255)

                   aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                                          <  2:1809179/91‑1 (MQ=255)

                   aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                                          <  2:57465/91‑1 (MQ=255)

                   aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                                          <  2:3247477/91‑1 (MQ=255)

                    aGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTa                                                                         >  1:2047331/1‑91 (MQ=255)

                    aGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTa                                                                         >  1:2800299/1‑91 (MQ=255)

                      tAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAt                                                                       <  2:1926298/91‑1 (MQ=255)

                      gtagcaaaaaaattagctaaaattgggataaaaggaaacctagctggaatcgcagctactatggtttcCTTTTATCCCAATTTTAGCTAAt                                                                       >  1:3542733‑M2/69‑91 (MQ=255)

                       aaCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtt                                                                      >  2:1053345/1‑91 (MQ=255)

                         cccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttt                                                                    >  2:3036430/1‑91 (MQ=255)

                         cccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttt                                                                    <  1:472703/91‑1 (MQ=255)

                          ccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttt                                                                   >  2:1667373/1‑91 (MQ=255)

                          ccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttt                                                                   >  2:2677264/1‑91 (MQ=255)

                          ccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttt                                                                   <  1:1548644/91‑1 (MQ=255)

                           cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                                                  <  1:247224/91‑1 (MQ=255)

                           cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                                                  <  1:765458/91‑1 (MQ=255)

                           cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                                                  >  1:2596018/1‑91 (MQ=255)

                            gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                                                                 >  2:1986651/1‑91 (MQ=255)

                            gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                                                                 >  2:1861621/1‑91 (MQ=255)

                              aTTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttgct                                                               <  2:792199/91‑4 (MQ=255)

                                ttAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTa                                                             >  2:723282/1‑91 (MQ=255)

                                   aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                                          >  1:1482578/1‑91 (MQ=255)

                                   aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                                          >  1:2112357/1‑91 (MQ=255)

                                   aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTATGCTACGc                                                          >  2:3371516/1‑91 (MQ=255)

                                     aTTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGccc                                                        >  1:1344771/1‑91 (MQ=255)

                                     aTTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGccc                                                        >  1:3117191/1‑91 (MQ=255)

                                      ttACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCt                                                       <  1:2392401/91‑1 (MQ=255)

                                       tagctaaaattgggataaaaggaaacctagctggaatcgcagctaggtttcCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                                                      >  2:652036‑M2/52‑91 (MQ=255)

                                       tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                                                      <  2:1613134/91‑1 (MQ=255)

                                       tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                                                      <  1:1767406/91‑1 (MQ=255)

                                        aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                                                     <  2:511520/91‑1 (MQ=255)

                                           ttGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAG                                                  >  1:611385‑M1/1‑91 (MQ=255)

                                            tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGT                                                 >  2:3722947‑M1/1‑91 (MQ=255)

                                            tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGT                                                 <  2:2540320‑M1/91‑1 (MQ=255)

                                             gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                                                <  1:2729650‑M1/91‑1 (MQ=255)

                                                cATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTT                                             <  2:2604613‑M1/91‑1 (MQ=255)

                                                 aTCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTG                                            >  1:3393281‑M1/1‑91 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                           <  2:2406650/91‑1 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                           <  2:2822903/91‑1 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                           <  1:3680151/91‑1 (MQ=255)

                                                     ttCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCtt                                        <  2:445278/91‑1 (MQ=255)

                                                      tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCttt                                       <  1:1204983/91‑1 (MQ=255)

                                                       cGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa                                      >  2:2890022/1‑91 (MQ=255)

                                                       cGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa                                      >  1:2249788/1‑91 (MQ=255)

                                                         AAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAAc                                    >  2:120345‑M1/1‑91 (MQ=255)

                                                         AAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAAc                                    <  1:549533‑M1/91‑1 (MQ=255)

                                                          AACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACa                                   >  1:1134161‑M1/1‑91 (MQ=255)

                                                           ACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACAt                                  <  1:3326498‑M1/91‑1 (MQ=255)

                                                            CCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATc                                 <  2:2123821‑M1/91‑1 (MQ=255)

                                                            CCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATc                                 <  2:2272382‑M1/91‑1 (MQ=255)

                                                             CATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCt                                <  2:2474226‑M1/91‑1 (MQ=255)

                                                              aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCTCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt                               <  2:3506803/91‑1 (MQ=255)

                                                              aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt                               >  1:2177177/1‑91 (MQ=255)

                                                                agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca                             >  1:287166‑M2/1‑89 (MQ=255)

                                                                agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca                             >  2:1412856‑M2/1‑89 (MQ=255)

                                                                 gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa                            <  1:678066‑M2/91‑4 (MQ=255)

                                                                   ggaatcgcagctactatggtttcCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCaaaa                          >  2:310914‑M2/24‑91 (MQ=255)

                                                                   AGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCaaaa                          <  1:2662386‑M1/91‑1 (MQ=255)

                                                                     ctggaatcgcagctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAAc                        >  2:3660979‑M2/16‑91 (MQ=255)

                                                                        cGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAActgc                     <  1:3248542/91‑1 (MQ=255)

                                                                         gATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaaa                           >  2:3578640‑M2/1‑80 (MQ=255)

                                                                         gATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAActgct                    >  1:2956607/1‑91 (MQ=255)

                                                                          atcgcagctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAActgctg                   >  1:1838196‑M2/11‑91 (MQ=255)

                                                                            tCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCtgtg                 >  1:1420431/1‑91 (MQ=255)

                                                                             ccAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa                <  2:2198652/91‑1 (MQ=255)

                                                                             ccAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa                <  1:3825963/91‑1 (MQ=255)

                                                                             ccAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa                <  1:905547/91‑1 (MQ=255)

                                                                             ccAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa                >  2:1732757/1‑91 (MQ=255)

                                                                               agctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGAtt              <  2:1131429‑M2/86‑1 (MQ=255)

                                                                                gctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTa             >  1:1000024‑M2/5‑91 (MQ=255)

                                                                                gctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTa             >  2:3314863‑M2/5‑91 (MQ=255)

                                                                                gctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTa             >  1:832118‑M2/5‑91 (MQ=255)

                                                                                gctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCATTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTa             >  2:2753910‑M2/5‑91 (MQ=255)

                                                                                 ctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTAt            >  2:3789215‑M2/4‑91 (MQ=255)

                                                                                  tagatttcCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGAGATTATg           >  2:3439667‑M2/9‑91 (MQ=255)

                                                                                   aGGTTACCTTTTATCCCAATTTTAGCTATTTTTTTTGCTACGCCCTTTAAGTTTTTGaagatgttaaagccaaaaacttaaagggcgtagc          <  1:1978185‑M1/91‑35 (MQ=255)

                                                                                       ttcCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGTTTcc      <  2:3869358‑M2/88‑1 (MQ=255)

                                                                                       ttcCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGTTTcc      <  2:317571‑M2/88‑1 (MQ=255)

                                                                                       ttcCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGTTTcc      >  2:1540742‑M2/4‑91 (MQ=255)

                                                                                          cTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAGCTGCTGTGATTATGTTTCCAGt   <  2:927741/91‑1 (MQ=255)

                                                                                          cTTTTATCCCAATTTTAGCTAATTTTTTTGCTACACCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGTTTCCAGt   >  2:2053501/1‑91 (MQ=255)

TTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGTTTCCAGTT  >  NC_012417/2077‑2258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.