| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 920390 | 123 (0.650) | 12 (0.080) | 6/132 | NT | 10.2% | intergenic (+19/‑194) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 920428 | 109 (0.700) | intergenic (+57/‑156) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein | |||||
Only 100 of 261 total aligned reads displayed.
ACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAG > USA300TCH1516_ALE/920300‑920480 | gatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGAAATCCACaaaa > 2:1534304‑M1/78‑91 (MQ=255) caacGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaag < 1:3775861/91‑1 (MQ=255) cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAACTCATGCAATATAAATAATCGACCGCAATCCACAAaagcac < 2:3182903/91‑1 (MQ=255) cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcac > 2:1050964/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaa > 1:1700761/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAACCCACAAaagcacaa > 1:2267380/1‑91 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc > 1:1114906/1‑91 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc < 2:3512260/91‑1 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc > 2:1363726/1‑91 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc < 2:2413952/91‑1 (MQ=255) cccGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagc > 2:660962‑M1/1‑82 (MQ=255) cGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAGTCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCAcc > 2:2992672/1‑91 (MQ=255) ccAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCAcccc < 1:2452486/91‑1 (MQ=255) aaCACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCa > 1:1102081/1‑91 (MQ=255) acacCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCaa < 2:2159027/91‑1 (MQ=255) acacCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCaa < 1:131842/91‑1 (MQ=255) acacCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATACACAAAAGCACAAGCACCCCCaa < 2:344434/91‑1 (MQ=255) ccATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACa > 2:2836851/1‑91 (MQ=255) ccATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACa > 2:2848617/1‑91 (MQ=255) tcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcaca > 2:521370/1‑74 (MQ=255) aaTATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACCTTATTTTAGTg > 2:1142019/1‑91 (MQ=255) atatAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGc < 1:2723593/91‑1 (MQ=255) atatAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGc < 1:1456049/91‑1 (MQ=255) ataATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCtt < 2:811754/91‑1 (MQ=255) ataATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCtt < 2:2106071/91‑1 (MQ=255) taATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTg > 1:47706/1‑91 (MQ=255) aatcaatcAAATTAATCAAATCATGCAATCTAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTGGTGCTTGc > 2:3378866/1‑91 (MQ=255) aatcaatcAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGc < 1:1961258/91‑1 (MQ=255) atcaatcaAATTAATCAAATCATGCAATATAGATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGcc > 1:619658/1‑91 (MQ=255) atcaatcaAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGcc < 2:1019147/91‑1 (MQ=255) aaTCAAATTAATCAAATCATGCAATATAAATCATCGACCGCAATCCACAAAAGCACACGCACCCCCAAACATTATTTTAGTGCTTGCCATt < 1:3448703‑M2/91‑2 (MQ=255) aaTCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATt < 1:65449‑M2/91‑2 (MQ=255) ttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttt > 2:3646668‑M1/38‑91 (MQ=255) ttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttt > 1:3147540‑M1/38‑91 (MQ=255) aTCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATtt > 1:2525811‑M2/1‑89 (MQ=255) tcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttt < 1:3207788‑M1/91‑42 (MQ=255) tcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttt < 2:1533913‑M1/91‑42 (MQ=255) tCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttt > 1:1665645‑M2/1‑88 (MQ=255) gatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttttt > 2:2584614‑M1/36‑91 (MQ=255) caaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgctttt < 1:3099526‑M1/91‑43 (MQ=255) aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgt < 2:1542463‑M1/91‑45 (MQ=255) aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgt < 2:467459‑M1/91‑45 (MQ=255) aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgt > 1:2465814‑M2/1‑85 (MQ=255) aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgt < 1:557501‑M2/91‑7 (MQ=255) ttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTgg > 2:1564194‑M1/32‑91 (MQ=255) ttAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtgg < 1:305977‑M2/91‑9 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat < 1:2062668‑M2/91‑11 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat < 1:2062700‑M2/91‑11 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtgg > 2:2159829‑M2/1‑81 (MQ=255) tcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAaagcacaagca < 2:2020225/50‑1 (MQ=255) tcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAaagcacaagca > 1:2020225/1‑50 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt < 2:1331371/91‑1 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt > 2:605775/1‑91 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt < 1:2883105/91‑1 (MQ=255) atcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGtt > 2:799438/1‑91 (MQ=255) caTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTc < 2:1641994/91‑1 (MQ=255) aTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCt < 1:2091777/91‑1 (MQ=255) cAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAtt < 1:2992672/91‑1 (MQ=255) aaTATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAttt > 2:243353/1‑91 (MQ=255) aaTATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAttt < 1:3220391/91‑1 (MQ=255) aaTATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTATAttt > 2:3143855/1‑91 (MQ=255) atatAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAtttt > 1:1334839/1‑91 (MQ=255) atatAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATCTTTGTGGATTGCGTTTCTAtttt > 2:1531455/1‑91 (MQ=255) tataAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTa > 2:2689536/1‑91 (MQ=255) taaataaTCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTAcc < 2:1235171/91‑1 (MQ=255) aataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATGTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCaa > 1:3867426/1‑91 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt < 1:1585848/91‑1 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt < 2:2718928/91‑1 (MQ=255) aatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAttt < 1:63317/91‑1 (MQ=255) gACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATc < 2:3294449/91‑1 (MQ=255) aCCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCa > 2:859163/1‑91 (MQ=255) ccGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaa > 2:2758166/1‑91 (MQ=255) ccGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaa > 1:3629724/1‑91 (MQ=255) cGCAATCCACAAAAatggcaagcactagaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgattt < 2:1341541‑M1/91‑78 (MQ=255) cGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgattt < 2:2798146‑M1/91‑78 (MQ=255) cGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgattt > 2:178826‑M1/1‑14 (MQ=255) gCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttg > 2:3656728‑M1/1‑13 (MQ=255) cAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttga < 2:850971‑M1/91‑80 (MQ=255) AATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGa > 2:3572368‑M1/1‑91 (MQ=255) aTCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgatt < 1:2955943‑M1/91‑82 (MQ=255) aTCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgatt < 1:2955944‑M1/91‑82 (MQ=255) aTCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgatt < 2:972009‑M1/91‑82 (MQ=255) aTCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgatt < 1:755332‑M1/91‑82 (MQ=255) aTCCACAAAAatgacaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgatt > 2:2799548‑M1/1‑10 (MQ=255) ATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGaa < 1:1062474‑M1/91‑1 (MQ=255) TCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGaaa > 1:3132533‑M1/1‑91 (MQ=255) TCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGaaa > 2:557501‑M1/1‑91 (MQ=255) TCCACAAAAGCACAAGCACCCCCAAACATTATTTCAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGaaa < 2:1835056‑M1/91‑1 (MQ=255) CCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGaaaa < 2:427734‑M1/91‑1 (MQ=255) cacaAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggattgcggtcgattatttatattgcatgatttgattaat < 1:1180885‑M2/91‑47 (MQ=255) acaAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgattaatt < 1:3289589‑M1/91‑86 (MQ=255) acaAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgattaatt < 1:1163634‑M1/91‑86 (MQ=255) acaAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgattaatt > 1:929249‑M1/1‑6 (MQ=255) acaAAAGCACAAGCACCCCCAAACATTATTTCAGTGCTTGCCATttttgtggattgcggtcgattatttatattgcatgacttgattaatt < 2:3557307‑M2/91‑48 (MQ=255) caAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgattaattt < 2:1551342‑M1/91‑87 (MQ=255) CAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACAt < 1:3435581‑M1/91‑1 (MQ=255) aaaaatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgattaatttg > 1:1557278‑M1/1‑4 (MQ=255) aaaaGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggattgcggtcgattatttatattgcatgatttgattaatttg < 1:2064685‑M2/91‑50 (MQ=255) aaatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgatttgattaatttgat < 1:185887‑M1/91‑90 (MQ=255) AAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCaa < 1:906652‑M1/91‑1 (MQ=255) | ACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAG > USA300TCH1516_ALE/920300‑920480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |