New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 987447117 (0.610)27 (0.180) 18/128 NT 20.4% intergenic (+20/+35) fabF/USA300HOU_RS04885 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2/hypothetical protein
?USA300TCH1516_ALE = 987456 118 (0.780)intergenic (+29/+26) fabF/USA300HOU_RS04885 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2/hypothetical protein

Only 100 of 277 total aligned reads displayed.

GCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAATATTTATTA  >  USA300TCH1516_ALE/987359‑987537
                                                                                        |                                                                                          
gCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgt                                                                                          <  1:78474/91‑1 (MQ=255)
gCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgt                                                                                          <  2:65523/91‑1 (MQ=255)
gCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgt                                                                                          >  1:3122413/1‑91 (MQ=255)
   aTGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgttgt                                                                                       >  1:2130803/1‑91 (MQ=255)
    tGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgttgtt                                                                                      <  1:2889210/91‑1 (MQ=255)
      aGTAATAGCTTAGGCTTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaagacaa                                                                                    <  2:425940‑M1/91‑9 (MQ=255)
      aGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGtttt                                                                                    <  2:1203484/91‑1 (MQ=255)
      aGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGtttt                                                                                    <  2:2573976/91‑1 (MQ=255)
       gTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTa                                                                                   <  2:2124514/91‑1 (MQ=255)
       gTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTa                                                                                   >  1:139981/1‑91 (MQ=255)
       gTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTa                                                                                   >  1:2363833/1‑91 (MQ=255)
        tAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacg                                                                                  <  1:944038‑M1/91‑11 (MQ=255)
        tAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACg                                                                                           <  1:2963871/82‑1 (MQ=255)
         aaTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgt                                                                                 >  2:1534612‑M2/1‑89 (MQ=255)
         aaTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgt                                                                                 <  2:1800876‑M2/91‑3 (MQ=255)
          aTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgtt                                                                                >  2:1268743‑M2/1‑88 (MQ=255)
          aTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgtt                                                                                <  1:1251802‑M2/91‑4 (MQ=255)
               ttAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactga                                                                           <  1:842094‑M1/91‑18 (MQ=255)
               ttAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactga                                                                           <  1:2151543‑M1/91‑18 (MQ=255)
               ttAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactga                                                                           >  1:2025048‑M2/1‑83 (MQ=255)
                 aGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactgaag                                                                         <  1:310532‑M1/91‑20 (MQ=255)
                 aGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaag                                                                         <  2:2066963‑M2/91‑11 (MQ=255)
                 aGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaag                                                                         <  2:1644724‑M2/91‑11 (MQ=255)
                    aTTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagatt                                                                      <  1:2228224‑M2/91‑14 (MQ=255)
                       cGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagattttt                                                                   <  1:3288682‑M2/91‑17 (MQ=255)
                        ggTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGAtttttt                                                                  <  1:3169846/91‑1 (MQ=255)
                         gTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTc                                                                 <  1:2734800/91‑1 (MQ=255)
                           ggACCTAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGCAGCTCTAGTTACTGAAGATTCTTTCAg                                                               >  2:2814471/1‑91 (MQ=255)
                           ggACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAg                                                               <  1:3852006/91‑1 (MQ=255)
                             aCATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACCATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGtt                                                             <  2:3419160/91‑1 (MQ=255)
                               aTAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTc                                                           <  2:2602587/91‑1 (MQ=255)
                                 aaCGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCtt                                                         >  1:3786953/1‑91 (MQ=255)
                                    gCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttc                                                      <  2:1277858‑M1/91‑39 (MQ=255)
                                    gCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTtat                                                      >  2:3228237/1‑91 (MQ=255)
                                     cAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTCTTAGTTACTGAAGATTCTTTCAGTTTCTTtata                                                     >  2:104227/1‑91 (MQ=255)
                                       gtattagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACt                                                   <  2:1384308/91‑1 (MQ=255)
                                       gtattagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACt                                                   <  1:2617143/91‑1 (MQ=255)
                                         attagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTaa                                                 >  1:1660672/1‑91 (MQ=255)
                                          ttagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAg                                                >  2:459287/1‑91 (MQ=255)
                                          ttagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAg                                                >  1:2499273/1‑91 (MQ=255)
                                           tagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGa                                               >  1:3864308/1‑91 (MQ=255)
                                               attCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttga                                           <  2:2152270‑M2/91‑41 (MQ=255)
                                                      aaaTTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGc                                    >  1:1171917/1‑91 (MQ=255)
                                                        aTTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGcac                                  <  1:1023109/91‑1 (MQ=255)
                                                          ttGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACaa                                <  2:1171917/91‑1 (MQ=255)
                                                            gAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATc                              >  2:802298/1‑91 (MQ=255)
                                                            gAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATc                              >  1:478181/1‑91 (MQ=255)
                                                            gAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGACGAGCGACAGCACAATc                              >  2:2975386/1‑91 (MQ=255)
                                                             aaGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagatttttatagttatgcctcaaattccttgaatactaatactgcc                             <  2:878640‑M2/91‑55 (MQ=255)
                                                             aaGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCg                             >  2:1327606/1‑91 (MQ=255)
                                                              aGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGt                            <  2:1919796/91‑1 (MQ=255)
                                                              aGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGt                            >  2:39257/1‑91 (MQ=255)
                                                               gCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTc                           >  1:1108905/1‑91 (MQ=255)
                                                               gCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTc                           <  1:3465958/91‑1 (MQ=255)
                                                                    aCTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCataat                      >  1:1917588/1‑91 (MQ=255)
                                                                     cTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACTATCGTCataata                     <  1:2995264/91‑1 (MQ=255)
                                                                       ataAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaa                   >  2:1960281/1‑91 (MQ=255)
                                                                         aaaaaTCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccg                 >  1:3214039‑M1/1‑16 (MQ=255)
                                                                         aaaaaTCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccg                 <  1:1572113‑M1/91‑76 (MQ=255)
                                                                          aaaaTCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaata                <  1:1386289/91‑1 (MQ=255)
                                                                             aTCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataa             <  1:2159926/91‑1 (MQ=255)
                                                                             aTCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataa             >  1:2062879/1‑91 (MQ=255)
                                                                              tCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcc            >  2:1833675‑M1/1‑11 (MQ=255)
                                                                              ccTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataaa            <  2:3854511/90‑1 (MQ=255)
                                                                               cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct           >  2:3312306‑M1/1‑10 (MQ=255)
                                                                               cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct           >  1:1252667‑M1/1‑10 (MQ=255)
                                                                               cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct           >  1:1252216‑M1/1‑10 (MQ=255)
                                                                               cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct           >  2:2135355‑M1/1‑10 (MQ=255)
                                                                               cTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataaaa           >  2:1443434/1‑91 (MQ=255)
                                                                               cTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataaaa           >  2:2384372/1‑91 (MQ=255)
                                                                                ttCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatccta          <  2:1174996‑M1/91‑83 (MQ=255)
                                                                                 tCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatcctgcgttatgtccaccgaatcctaa         >  1:3602682‑M1/1‑8 (MQ=255)
                                                                                 tCAGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaa         <  1:2150423‑M2/91‑75 (MQ=255)
                                                                                  cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag        >  1:2224042‑M1/1‑7 (MQ=255)
                                                                                  cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag        >  1:743802‑M1/1‑7 (MQ=255)
                                                                                  cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag        >  2:3542898‑M1/1‑7 (MQ=255)
                                                                                  cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag        <  1:1782941‑M1/91‑85 (MQ=255)
                                                                                  cAGTAACtaaaacaacgttactgaagatttttatagttatacttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag        <  1:1546373‑M1/91‑85 (MQ=255)
                                                                                   aGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagc       <  1:2431661‑M1/91‑86 (MQ=255)
                                                                                   aGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagc       >  1:933690‑M1/1‑6 (MQ=255)
                                                                                   aGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgactcctaagc       <  2:1632948‑M2/91‑77 (MQ=255)
                                                                                   aGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagc       <  2:797887‑M2/91‑77 (MQ=255)
                                                                                   aGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatt       <  1:2906816/91‑1 (MQ=255)
                                                                                   aGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatt       >  2:2239485/1‑91 (MQ=255)
                                                                                    gTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagct      <  1:1890752‑M2/91‑78 (MQ=255)
                                                                                    gTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtattt      >  2:1776059/1‑91 (MQ=255)
                                                                                     tAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtattta     <  1:1436587/91‑1 (MQ=255)
                                                                                      aaCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat    <  1:3188103‑M1/91‑89 (MQ=255)
                                                                                      aaCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat    <  1:983785‑M1/91‑89 (MQ=255)
                                                                                      aaCGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat    <  2:345221‑M2/91‑80 (MQ=255)
                                                                                      aaCGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat    <  1:1843540‑M2/91‑80 (MQ=255)
                                                                                       aCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatt   >  2:695453‑M1/1‑2 (MQ=255)
                                                                                       aCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatt   <  2:1509057‑M1/91‑90 (MQ=255)
                                                                                       aCGTTGTTTTAgttactgaagatttttatagttatgcttcatatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatt   <  2:2951572‑M2/91‑81 (MQ=255)
                                                                                       aCGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatttatt   <  2:3574876/91‑1 (MQ=255)
                                                                                       aCGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatttatt   <  2:3763953/91‑1 (MQ=255)
                                                                                       aCGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatttatt   <  1:3255691/91‑1 (MQ=255)
                                                                                        ctaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatta  <  2:2938246‑M1/91‑91 (MQ=255)
                                                                                        ctaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatta  <  1:1905588‑M1/91‑91 (MQ=255)
                                                                                        cGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAATATttatta  <  1:653703/91‑1 (MQ=255)
                                                                                        |                                                                                          
GCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAATATTTATTA  >  USA300TCH1516_ALE/987359‑987537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.