New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 987447 | 117 (0.610) | 27 (0.180) | 18/128 | NT | 20.4% | intergenic (+20/+35) | fabF/USA300HOU_RS04885 | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2/hypothetical protein |
? | USA300TCH1516_ALE | = 987456 | 118 (0.780) | intergenic (+29/+26) | fabF/USA300HOU_RS04885 | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2/hypothetical protein |
Only 100 of 277 total aligned reads displayed.
GCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAATATTTATTA > USA300TCH1516_ALE/987359‑987537 | gCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgt < 1:78474/91‑1 (MQ=255) gCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgt < 2:65523/91‑1 (MQ=255) gCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgt > 1:3122413/1‑91 (MQ=255) aTGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgttgt > 1:2130803/1‑91 (MQ=255) tGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACgttgtt < 1:2889210/91‑1 (MQ=255) aGTAATAGCTTAGGCTTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaagacaa < 2:425940‑M1/91‑9 (MQ=255) aGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGtttt < 2:1203484/91‑1 (MQ=255) aGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGtttt < 2:2573976/91‑1 (MQ=255) gTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTa < 2:2124514/91‑1 (MQ=255) gTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTa > 1:139981/1‑91 (MQ=255) gTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTa > 1:2363833/1‑91 (MQ=255) tAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacg < 1:944038‑M1/91‑11 (MQ=255) tAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACg < 1:2963871/82‑1 (MQ=255) aaTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgt > 2:1534612‑M2/1‑89 (MQ=255) aaTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgt < 2:1800876‑M2/91‑3 (MQ=255) aTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgtt > 2:1268743‑M2/1‑88 (MQ=255) aTAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgtt < 1:1251802‑M2/91‑4 (MQ=255) ttAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactga < 1:842094‑M1/91‑18 (MQ=255) ttAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactga < 1:2151543‑M1/91‑18 (MQ=255) ttAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactga > 1:2025048‑M2/1‑83 (MQ=255) aGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactgaag < 1:310532‑M1/91‑20 (MQ=255) aGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaag < 2:2066963‑M2/91‑11 (MQ=255) aGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaag < 2:1644724‑M2/91‑11 (MQ=255) aTTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagatt < 1:2228224‑M2/91‑14 (MQ=255) cGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagattttt < 1:3288682‑M2/91‑17 (MQ=255) ggTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGAtttttt < 1:3169846/91‑1 (MQ=255) gTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTc < 1:2734800/91‑1 (MQ=255) ggACCTAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGCAGCTCTAGTTACTGAAGATTCTTTCAg > 2:2814471/1‑91 (MQ=255) ggACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAg < 1:3852006/91‑1 (MQ=255) aCATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACCATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGtt < 2:3419160/91‑1 (MQ=255) aTAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTc < 2:2602587/91‑1 (MQ=255) aaCGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCtt > 1:3786953/1‑91 (MQ=255) gCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttc < 2:1277858‑M1/91‑39 (MQ=255) gCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTtat > 2:3228237/1‑91 (MQ=255) cAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTCTTAGTTACTGAAGATTCTTTCAGTTTCTTtata > 2:104227/1‑91 (MQ=255) gtattagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACt < 2:1384308/91‑1 (MQ=255) gtattagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACt < 1:2617143/91‑1 (MQ=255) attagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTaa > 1:1660672/1‑91 (MQ=255) ttagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAg > 2:459287/1‑91 (MQ=255) ttagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAg > 1:2499273/1‑91 (MQ=255) tagtattCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGa > 1:3864308/1‑91 (MQ=255) attCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttga < 2:2152270‑M2/91‑41 (MQ=255) aaaTTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGc > 1:1171917/1‑91 (MQ=255) aTTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGcac < 1:1023109/91‑1 (MQ=255) ttGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACaa < 2:1171917/91‑1 (MQ=255) gAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATc > 2:802298/1‑91 (MQ=255) gAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATc > 1:478181/1‑91 (MQ=255) gAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGACGAGCGACAGCACAATc > 2:2975386/1‑91 (MQ=255) aaGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAgttactgaagatttttatagttatgcctcaaattccttgaatactaatactgcc < 2:878640‑M2/91‑55 (MQ=255) aaGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCg > 2:1327606/1‑91 (MQ=255) aGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGt < 2:1919796/91‑1 (MQ=255) aGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGt > 2:39257/1‑91 (MQ=255) gCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTc > 1:1108905/1‑91 (MQ=255) gCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTc < 1:3465958/91‑1 (MQ=255) aCTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCataat > 1:1917588/1‑91 (MQ=255) cTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACTATCGTCataata < 1:2995264/91‑1 (MQ=255) ataAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaa > 2:1960281/1‑91 (MQ=255) aaaaaTCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccg > 1:3214039‑M1/1‑16 (MQ=255) aaaaaTCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccg < 1:1572113‑M1/91‑76 (MQ=255) aaaaTCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaata < 1:1386289/91‑1 (MQ=255) aTCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataa < 1:2159926/91‑1 (MQ=255) aTCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataa > 1:2062879/1‑91 (MQ=255) tCTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcc > 2:1833675‑M1/1‑11 (MQ=255) ccTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataaa < 2:3854511/90‑1 (MQ=255) cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct > 2:3312306‑M1/1‑10 (MQ=255) cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct > 1:1252667‑M1/1‑10 (MQ=255) cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct > 1:1252216‑M1/1‑10 (MQ=255) cTTCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcct > 2:2135355‑M1/1‑10 (MQ=255) cTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataaaa > 2:1443434/1‑91 (MQ=255) cTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAataaaatataaaa > 2:2384372/1‑91 (MQ=255) ttCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatccta < 2:1174996‑M1/91‑83 (MQ=255) tCAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatcctgcgttatgtccaccgaatcctaa > 1:3602682‑M1/1‑8 (MQ=255) tCAGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaa < 1:2150423‑M2/91‑75 (MQ=255) cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag > 1:2224042‑M1/1‑7 (MQ=255) cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag > 1:743802‑M1/1‑7 (MQ=255) cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag > 2:3542898‑M1/1‑7 (MQ=255) cAGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag < 1:1782941‑M1/91‑85 (MQ=255) cAGTAACtaaaacaacgttactgaagatttttatagttatacttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaag < 1:1546373‑M1/91‑85 (MQ=255) aGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagc < 1:2431661‑M1/91‑86 (MQ=255) aGTAACtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagc > 1:933690‑M1/1‑6 (MQ=255) aGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgactcctaagc < 2:1632948‑M2/91‑77 (MQ=255) aGTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagc < 2:797887‑M2/91‑77 (MQ=255) aGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatt < 1:2906816/91‑1 (MQ=255) aGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatt > 2:2239485/1‑91 (MQ=255) gTAACGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagct < 1:1890752‑M2/91‑78 (MQ=255) gTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtattt > 2:1776059/1‑91 (MQ=255) tAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtattta < 1:1436587/91‑1 (MQ=255) aaCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat < 1:3188103‑M1/91‑89 (MQ=255) aaCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat < 1:983785‑M1/91‑89 (MQ=255) aaCGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat < 2:345221‑M2/91‑80 (MQ=255) aaCGTTGTTTTAgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctat < 1:1843540‑M2/91‑80 (MQ=255) aCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatt > 2:695453‑M1/1‑2 (MQ=255) aCtaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatt < 2:1509057‑M1/91‑90 (MQ=255) aCGTTGTTTTAgttactgaagatttttatagttatgcttcatatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatt < 2:2951572‑M2/91‑81 (MQ=255) aCGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatttatt < 2:3574876/91‑1 (MQ=255) aCGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatttatt < 2:3763953/91‑1 (MQ=255) aCGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAAtatttatt < 1:3255691/91‑1 (MQ=255) ctaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatta < 2:2938246‑M1/91‑91 (MQ=255) ctaaaacaacgttactgaagatttttatagttatgcttcaaatttcttgaatactaatactgcgttatgtccaccgaatcctaagctatta < 1:1905588‑M1/91‑91 (MQ=255) cGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAATATttatta < 1:653703/91‑1 (MQ=255) | GCAATGAGTAATAGCTTAGGATTCGGTGGACATAACGCAGTATTAGTATTCAAGAAATTTGAAGCATAACTATAAAAATCTTCAGTAACGTTGTTTTAGTTACTGAAGATTTTTTCAGTTTCTTTATACTAAGATGAGCGACAGCACAATCGTCATAATAAAATATAAAATATTTATTA > USA300TCH1516_ALE/987359‑987537 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |