New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1021264 =173 (0.910)9 (0.050) 6/144 NT 6.2% coding (871/1176 nt) ugtP Processive diacylglycerol beta‑glucosyltransferase
?USA300TCH1516_ALE 1021300 = 118 (0.690)coding (835/1176 nt) ugtP Processive diacylglycerol beta‑glucosyltransferase

Only 100 of 222 total aligned reads displayed.

TTTTACCAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAACCTAG  >  USA300TCH1516_ALE/1021174‑1021354
                                                                                          |                                                                                          
ttttACCAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGc                                                                                            <  2:1963968/91‑1 (MQ=255)
cagctaagtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattac                                                                                            >  1:72412‑M1/91‑91 (MQ=255)
 tttACCAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCg                                                                                           >  1:1745277/1‑91 (MQ=255)
 agctaagtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCg                                                                                           >  1:268659‑M1/90‑91 (MQ=255)
 agctaagtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCg                                                                                           >  1:2360575‑M1/90‑91 (MQ=255)
  ttACCAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGa                                                                                          <  2:369459/91‑1 (MQ=255)
  ttACCAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGa                                                                                          <  1:1812531/91‑1 (MQ=255)
  gctaagtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGa                                                                                          >  2:325107‑M1/89‑91 (MQ=255)
     ccAAAACCTTTTTCTTCTAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       <  1:1119913/91‑1 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       >  1:1073699/1‑91 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       >  1:900508/1‑91 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       >  1:364425/1‑91 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       >  1:3250277/1‑91 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       <  1:1813484/91‑1 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       >  1:1183914/1‑91 (MQ=255)
     ccAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAACTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAAc                                                                                       >  1:3279459/1‑91 (MQ=255)
     aagtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGAAAc                                                                                       <  1:3689611‑M1/6‑1 (MQ=255)
      agtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGAAAcc                                                                                      >  2:15592‑M1/85‑91 (MQ=255)
      agtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGAAAcc                                                                                      <  1:2450779‑M1/7‑1 (MQ=255)
       gtttaaatctaacgagaatgtattgattctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGAAACCt                                                                                     <  1:380568‑M1/8‑1 (MQ=255)
       aaaaCCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCt                                                                                     <  1:1588540/91‑1 (MQ=255)
       aaaaCCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCt                                                                                     <  2:1525930/91‑1 (MQ=255)
       aaaaCCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCt                                                                                     <  1:229430/91‑1 (MQ=255)
             tttttCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGtt                                                                               <  1:2661922/91‑1 (MQ=255)
              ttttCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTa                                                                              <  1:12592/91‑1 (MQ=255)
              ttttCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTa                                                                              <  1:2535115/91‑1 (MQ=255)
               tttCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTAt                                                                             >  1:1789339/1‑91 (MQ=255)
                ttcttcAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTAtt                                                                            <  1:3577020/91‑1 (MQ=255)
                 tcttcAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATtg                                                                           >  2:1638933/1‑91 (MQ=255)
                 tcttcAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATtg                                                                           >  2:1400658/1‑91 (MQ=255)
                  cttcAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATtgt                                                                          <  1:2350126/91‑1 (MQ=255)
                   ttcAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATtgtg                                                                         <  2:2552697/91‑1 (MQ=255)
                    tcAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGa                                                                        <  1:193487/91‑1 (MQ=255)
                    tcAAAGTAAAGGGCATTTGCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGa                                                                        <  1:191886/91‑1 (MQ=255)
                     cAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAACATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGAt                                                                       <  2:2948869/91‑1 (MQ=255)
                        aGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATacc                                                                    >  1:2760846/1‑91 (MQ=255)
                         gTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATacca                                                                   <  2:1073547/91‑1 (MQ=255)
                          tAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATaccac                                                                  <  2:3314457/91‑1 (MQ=255)
                          tAAAGGGCATTTTCAAGCTCGTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATaccac                                                                  <  2:570117/91‑1 (MQ=255)
                           aaaGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATaccacc                                                                 >  1:3831560/1‑91 (MQ=255)
                           aaaGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATaccacc                                                                 >  1:2739495/1‑91 (MQ=255)
                            aaGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATAccacca                                                                >  2:3023762/1‑91 (MQ=255)
                              gggCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAgg                                                              <  1:2939736/91‑1 (MQ=255)
                               ggCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGt                                                             >  2:2232437/1‑91 (MQ=255)
                                gCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATCGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGtt                                                            <  1:3086472/91‑1 (MQ=255)
                                 cATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGttt                                                           <  2:851373/91‑1 (MQ=255)
                                  tctaggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGAAACCTTCAGTTATTGTGATACCACCAGGTTTc                                                          >  1:997790‑M1/57‑91 (MQ=255)
                                   ttttCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCg                                                         >  1:508244/1‑91 (MQ=255)
                                    tttCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAg                                                               >  1:1708665/1‑84 (MQ=255)
                                    tttCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAg                                                               <  2:1708665/84‑1 (MQ=255)
                                     ttCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTa                                                       >  2:3526319/1‑91 (MQ=255)
                                      tCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGATTCGTaa                                                      >  2:1247464/1‑91 (MQ=255)
                                      ggttataccaaacacatgaatgaatggatggcatcaagtcaacttatgattaCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTaa                                                      >  1:2433410‑M1/53‑91 (MQ=255)
                                        aaGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATc                                                    >  2:1937794/1‑91 (MQ=255)
                                         aGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCa                                                   <  1:1559508/91‑1 (MQ=255)
                                           ctctTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATa                                                 <  1:3536966/91‑1 (MQ=255)
                                           ctctTGACCAGGAGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTATGATACCACCAGGTTTCGTAATCATa                                                 <  2:3221690/91‑1 (MQ=255)
                                              ttGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGt                                              >  1:2191766/1‑91 (MQ=255)
                                              ttGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGt                                              <  1:3133999/91‑1 (MQ=255)
                                              ttGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGt                                              <  1:1506829/91‑1 (MQ=255)
                                                 aCCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGa                                           >  2:2838566/1‑91 (MQ=255)
                                                   cAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACt                                         <  1:2235943/91‑1 (MQ=255)
                                                   cAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACt                                         >  2:2301067/1‑91 (MQ=255)
                                                   cAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACt                                         <  2:664859/91‑1 (MQ=255)
                                                     ggTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTg                                       >  1:2980844/1‑91 (MQ=255)
                                                      gTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACATGa                                      >  1:3052853/1‑91 (MQ=255)
                                                       tGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGAt                                     <  1:2826649/91‑1 (MQ=255)
                                                         cAGGATTTAGGAAAATCATTGGAATCCAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGc                                   <  1:3606826/91‑1 (MQ=255)
                                                         cAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGc                                   <  1:1413563/91‑1 (MQ=255)
                                                         cAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTGCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGc                                   <  2:3412811/91‑1 (MQ=255)
                                                          aGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGcc                                  >  1:939931/1‑91 (MQ=255)
                                                          aGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGcc                                  >  1:738080/1‑91 (MQ=255)
                                                           ggATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGcca                                 >  1:466422/1‑91 (MQ=255)
                                                             aTTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGccatc                               >  1:142496/1‑91 (MQ=255)
                                                                  ggAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCcattc                          >  2:3157511/1‑91 (MQ=255)
                                                                     aaaTCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCcattcatt                       <  1:3575182/91‑1 (MQ=255)
                                                                     aaaTCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCcattcatt                       >  1:315039/1‑91 (MQ=255)
                                                                     aaaTCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTAATGCCATCcattcatt                       >  1:1212616/1‑91 (MQ=255)
                                                                      aaTCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCattcattc                      <  2:2684500/91‑1 (MQ=255)
                                                                      aaTCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCattcattc                      <  1:2104777/91‑1 (MQ=255)
                                                                        tCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATtcattcat                    <  2:2140199/91‑1 (MQ=255)
                                                                          aTTGGAATATAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCAtgt                  <  1:3719451/91‑1 (MQ=255)
                                                                          aTTGGAATATAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCAtgt                  <  1:3719697/91‑1 (MQ=255)
                                                                          aTTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGTCATCCATTCATTCAtgt                  <  2:436860/91‑1 (MQ=255)
                                                                          aTTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCAtgt                  >  2:1107583/1‑91 (MQ=255)
                                                                          aTTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCAtgt                  <  2:3662587/91‑1 (MQ=255)
                                                                             ggAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGtt               <  1:2578597/91‑1 (MQ=255)
                                                                              gAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGttt              >  1:2879877/1‑91 (MQ=255)
                                                                                aTACAACGGGCGAAACTTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTgg            <  2:3713107/91‑1 (MQ=255)
                                                                                aTACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTgg            <  1:2049895/91‑1 (MQ=255)
                                                                                aTACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTgg            >  1:1379712/1‑91 (MQ=255)
                                                                                 tACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGt           >  2:2320367/1‑91 (MQ=255)
                                                                                  aCAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGta          >  1:1006962/1‑91 (MQ=255)
                                                                                     aCGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATaa       >  2:2383428/1‑91 (MQ=255)
                                                                                     aCGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATaa       <  2:2248908/91‑1 (MQ=255)
                                                                                      cGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAAc      >  2:20433/1‑91 (MQ=255)
                                                                                       ttaCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAAcc     >  1:2118647‑M1/4‑91 (MQ=255)
                                                                                       gggCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAAcc     >  1:562411/1‑91 (MQ=255)
                                                                                          CGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAACCTAg  >  1:796585‑M1/1‑91 (MQ=255)
                                                                                          CGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAACCTAg  >  1:3198981‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
TTTTACCAAAACCTTTTTCTTCAAAGTAAAGGGCATTTTCAAGCTCTTGACCAGGTGCAGGATTTAGGAAAATCATTGGAATACAACGGGCGAAACCTTCAGTTATTGTGATACCACCAGGTTTCGTAATCATAAGTTGACTTGATGCCATCCATTCATTCATGTGTTTGGTATAACCTAG  >  USA300TCH1516_ALE/1021174‑1021354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.