| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1072018 = | 174 (0.910) | 11 (0.070) | 6/126 | NT | 7.7% | intergenic (‑490/+315) | USA300HOU_RS05290/folD | Pesticidal crystal protein Cry22Aa/Bifunctional protein FolD protein |
| ? | USA300TCH1516_ALE | 1072073 = | 129 (0.860) | intergenic (‑545/+260) | USA300HOU_RS05290/folD | Pesticidal crystal protein Cry22Aa/Bifunctional protein FolD protein | |||||
Only 100 of 272 total aligned reads displayed.
GGCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTATTCAT > USA300TCH1516_ALE/1071928‑1072108 | ggCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTAGTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGa > 2:3828868/1‑91 (MQ=255)ggCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGa < 2:831380/91‑1 (MQ=255)ggCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGa > 1:3117714/1‑91 (MQ=255)ggCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGa < 1:1595840/91‑1 (MQ=255) gCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGaa > 1:967184/1‑91 (MQ=255) tgagttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcaaa < 1:1665827‑M1/3‑1 (MQ=255) tgagttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcaaa < 1:2241351‑M1/3‑1 (MQ=255) cccTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGaaa < 1:1319342/91‑1 (MQ=255) gagttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAAt > 1:2942002‑M1/88‑91 (MQ=255) agttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATg > 2:2510702‑M1/87‑91 (MQ=255) agttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATg < 2:2240112‑M1/5‑1 (MQ=255) tGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGc < 1:3700955/91‑1 (MQ=255) ttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCt > 2:1901802‑M1/85‑91 (MQ=255) ttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCt > 2:3027651‑M1/85‑91 (MQ=255) ttttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCt > 1:518563‑M1/85‑91 (MQ=255) ttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTcc < 1:3776840‑M1/9‑1 (MQ=255) ttaataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTcc < 1:1929172‑M1/9‑1 (MQ=255) cTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTcc < 2:3134756/91‑1 (MQ=255) tAGAATTGAAAACTTG‑TACAAGCTTATTTTCATTCAGTTAACTACTGTCTATATAAAATTGTTGAGCGAAGTACAAAGTGAAATGCTCCCt < 2:3507292/91‑1 (MQ=38) aataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCt < 1:879886‑M1/11‑1 (MQ=255) aGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCt > 1:748659/1‑91 (MQ=255) ataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCtt < 1:220806‑M1/12‑1 (MQ=255) ataaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCtt < 2:489521‑M1/12‑1 (MQ=255) aaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCa > 2:253697‑M1/78‑91 (MQ=255) aaagtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCa < 1:3356227‑M1/14‑1 (MQ=255) agtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCaaa > 2:3089762‑M1/76‑91 (MQ=255) agtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCaaa > 2:686440‑M1/76‑91 (MQ=255) agtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCaaa < 1:1107982‑M1/16‑1 (MQ=255) gtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAg < 2:729419‑M1/17‑1 (MQ=255) gtcttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAg > 1:1176706‑M1/75‑91 (MQ=255) gAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAg < 1:2457926/91‑1 (MQ=255) gAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAg > 2:1268260/1‑91 (MQ=255) aaaCTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGcc > 2:1955963/1‑91 (MQ=255) ttttaacccacattaaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAGCCt < 2:2568039‑M1/20‑1 (MQ=255) aCTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCtt < 1:1740930/91‑1 (MQ=255) cTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTc > 1:434305/1‑91 (MQ=255) tGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCAt > 1:3811773/1‑91 (MQ=255) tGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCAt < 2:1462759/91‑1 (MQ=255) tGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCAt > 2:2756335/1‑91 (MQ=255) tGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCAt < 2:2005397/91‑1 (MQ=255) tGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCAt < 1:2168667/91‑1 (MQ=255) tGTTACAAGCTTATCTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCAt > 1:3462438/1‑91 (MQ=255) aCAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTAt > 1:1458521/1‑91 (MQ=255) gCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCaa > 2:574804/1‑91 (MQ=255) gCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCaa > 2:3199780/1‑91 (MQ=255) ttATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATg > 1:280840/1‑91 (MQ=255) aaatattattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCt < 2:2062468‑M1/7‑1 (MQ=255) ttttCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCt < 1:3140584/91‑1 (MQ=255) ttttCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCt > 2:1624565/1‑91 (MQ=255) ttttCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCt < 1:62651/91‑1 (MQ=255) tttCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTa < 1:20388/91‑1 (MQ=255) tttCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTa < 2:1777052/91‑1 (MQ=255) ttcattcaATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCa < 1:3191108/83‑1 (MQ=255) ttcattcaATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTAc > 1:2782391/1‑91 (MQ=255) ttattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTAc > 1:683668‑M1/53‑91 (MQ=255) tattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACt > 2:2989180‑M1/52‑91 (MQ=255) tattttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACt > 1:2710835‑M1/52‑91 (MQ=255) tttgcaattgcaatgaataacaagaaaaatctgggacattaatcgatcAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTg > 2:3325620‑M1/49‑91 (MQ=255) tcaATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGa < 1:2280238/91‑1 (MQ=255) aTTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAgg > 1:426127/1‑91 (MQ=255) ttAACGACAGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTTCTTTGAAggg < 2:503644/91‑1 (MQ=255) aaCTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAg > 1:172243/1‑91 (MQ=255) aaCTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAg > 1:708356/1‑91 (MQ=255) actactGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGc > 1:2124749/1‑91 (MQ=255) tactGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCAt < 1:3423655/91‑1 (MQ=255) actGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCAtt > 2:2281444/1‑91 (MQ=255) ctGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCAttt > 2:1032880/1‑91 (MQ=255) ctGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCAttt > 2:2166180/1‑91 (MQ=255) cTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATc < 2:1819507/91‑1 (MQ=255) tatataAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCg > 2:2017297/1‑91 (MQ=255) tataAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGAt < 1:109357/91‑1 (MQ=255) tataAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGAt > 2:1597442/1‑91 (MQ=255) taAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTa > 2:1187756/1‑91 (MQ=255) taAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTa < 2:3316656/91‑1 (MQ=255) aaaTTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAAt > 2:1376608/1‑91 (MQ=255) gttgAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTccc < 1:2907013/91‑1 (MQ=255) ttgAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCa < 2:3803928/91‑1 (MQ=255) gAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGa > 1:263439/1‑91 (MQ=255) gAGCCAAGTACAAAGTGAAATGCTACCTTCAAAGCCTTCATTTCTTCAATTTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGa < 2:3606525/91‑1 (MQ=37) aGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGAt > 2:2965868/1‑91 (MQ=255) gCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGAtt < 1:2381147/91‑1 (MQ=255) ccAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGAttt > 1:836682/1‑91 (MQ=255) aaGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGAttttt > 2:2528048/1‑91 (MQ=255) agaaCAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGGTTTTTc > 1:765265/4‑91 (MQ=255) gTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCt > 1:642669/1‑91 (MQ=255) tACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCtt < 1:3723218/91‑1 (MQ=255) aCAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGCGCATTTGATCGATTAATGTCCCAGATGTTTCTTg > 2:3460092/1‑91 (MQ=255) aCAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGGTCGATTAATGTCCCAGATTTTTCTTg < 2:2212293/91‑1 (MQ=255) aCAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTg > 2:3765651/1‑91 (MQ=255) cAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGACTTTTCTTGt < 1:1955963/91‑1 (MQ=255) cAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGCGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGt < 1:3261106/91‑1 (MQ=255) aaGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTa > 1:2152072/1‑91 (MQ=255) aaGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTa > 1:1380831/1‑91 (MQ=255) aGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTAt < 2:391926/91‑1 (MQ=255) aGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTAt > 1:2998325/1‑91 (MQ=255) gTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTAtt > 2:1387627/1‑91 (MQ=255) gTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTAtt > 2:2974237/1‑91 (MQ=255) gTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTAtt > 2:879886/1‑91 (MQ=255) AAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTATTCat < 2:3508608‑M1/91‑1 (MQ=255) AAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTATTCat < 2:714768‑M1/91‑1 (MQ=255) | GGCCCTGACTAGAATTGAAAACTTGTTACAAGCTTATTTTCATTCAATTAACTACTGTCTATATAAAATTGTTGAGCCAAGTACAAAGTGAAATGCTCCCTTCAAAGCCTTCATTTATTCAATGTCTACTTTGAAGGGAGCATTTGATCGATTAATGTCCCAGATTTTTCTTGTTATTCAT > USA300TCH1516_ALE/1071928‑1072108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |