BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1131036 =	188 (0.990)	11 (0.070)	10/126	NT	7.6%	coding (435/435 nt)	USA300HOU_RS05590	hypothetical protein
*	?	USA300TCH1516_ALE	1131101 =	120 (0.800)	11 (0.070)	10/126	NT	7.6%	coding (925/927 nt)	glpQ1	putative glycerophosphodiester phosphodiesterase 1

Only 100 of 268 total aligned reads displayed.

AGAACATGTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAAT  >  USA300TCH1516_ALE/1130946‑1131126

tgaatgatttataccaaaaaggtgcacacacgattgtgacagagcgaccagatttagcacaacaattcaaacaaacaatcccgaataaata                                                                                             <  2:2414467‑M1/1‑1 (MQ=255)

 gaatgatttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaataa                                                                                            >  2:893275‑M1/90‑91 (MQ=255)

 gAACATGTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGAGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATaaa                                                                                            >  2:410755/1‑91 (MQ=255)

  aatgatttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaataaa                                                                                           >  2:102039‑M1/89‑91 (MQ=255)

  aatgatttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaataaa                                                                                           <  2:105304‑M1/3‑1 (MQ=255)

   atgatttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaataaaa                                                                                          >  2:2529177‑M1/88‑91 (MQ=255)

    tgatttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaataaaaa                                                                                         >  1:2603747‑M1/87‑91 (MQ=255)

     aTGTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑c                                                                                       <  2:1621186/91‑1 (MQ=255)

     aTGTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑c                                                                                       <  1:3832172/91‑1 (MQ=255)

      tGTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑Ca                                                                                      >  2:639866/1‑91 (MQ=255)

      atttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttggcacaacaattcaaacaaacaatcccgaataaatAAAAA‑Ca                                                                                      >  1:3360298‑M1/85‑91 (MQ=255)

      atttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑Ca                                                                                      <  2:3752162‑M1/7‑1 (MQ=255)

       gTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CAt                                                                                     <  2:3524795/91‑1 (MQ=255)

        ttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATc                                                                                    <  1:970355‑M1/9‑1 (MQ=255)

        ttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATc                                                                                    <  2:2986356‑M1/9‑1 (MQ=255)

        ttataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATc                                                                                    <  2:3261540‑M1/9‑1 (MQ=255)

         cAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCg                                                                                   >  1:2414364/1‑91 (MQ=255)

         cAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCg                                                                                   >  2:3494257/1‑91 (MQ=255)

         cAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCg                                                                                   >  2:328585/1‑91 (MQ=255)

          ataccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGa                                                                                  >  2:2703027‑M1/81‑91 (MQ=255)

          aaaaTAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGa                                                                                  >  2:1874350/1‑91 (MQ=255)

          aaaaTAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGa                                                                                  >  2:1150459/1‑91 (MQ=255)

          aaaaTAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGa                                                                                  >  2:2905426/1‑91 (MQ=255)

           taccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGAg                                                                                 <  2:838415‑M1/12‑1 (MQ=255)

           taccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGAg                                                                                 <  2:261290‑M1/12‑1 (MQ=255)

           aaaTAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAg                                                                                 >  2:776624/1‑91 (MQ=255)

           aaaTAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAg                                                                                 >  1:1350803/1‑91 (MQ=255)

             ccaaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGCGTc                                                                               <  1:3494346‑M1/14‑1 (MQ=255)

               aaaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCg                                                                                   >  1:3724825‑M1/76‑85 (MQ=255)

                gAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGa                                                                            <  1:2663933/91‑1 (MQ=255)

                gAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGa                                                                            >  2:2208088/1‑91 (MQ=255)

                aaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGAGTCAGa                                                                            >  1:516308‑M1/75‑91 (MQ=255)

                aaaaggtgcacacacgattgtgacagatcgaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGAGTCAGa                                                                            >  2:1871386‑M1/75‑91 (MQ=255)

                  aaCAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGaaa                                                                          >  1:671694/1‑91 (MQ=255)

                     aGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAg                                                                       <  2:2209878/91‑1 (MQ=255)

                      ggTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAgg                                                                      <  1:1160312/91‑1 (MQ=255)

                       gTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAggt                                                                     <  1:2135758/91‑1 (MQ=255)

                         aaTCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAggtgg                                                                   >  1:1865606/1‑91 (MQ=255)

                          aTCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAggtggt                                                                  <  1:996066/91‑1 (MQ=255)

                          aTCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAggtggt                                                                  <  1:725082/91‑1 (MQ=255)

                           tCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGtt                                                                 >  2:1113510/1‑91 (MQ=255)

                            ccATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTa                                                                >  1:1119633/1‑91 (MQ=255)

                             cATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTAt                                                               <  2:1396747/91‑1 (MQ=255)

                               ttCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGtttcaa                                                             <  1:784715/91‑5 (MQ=255)

                                tCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGa                                                            <  2:3027876/91‑1 (MQ=255)

                                   ttCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAAc                                                         <  1:1717140/91‑1 (MQ=255)

                                   ttCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAAc                                                         <  2:2769978/91‑1 (MQ=255)

                                     cAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCa                                                       <  2:2590260/91‑1 (MQ=255)

                                      aaaCATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCac                                                      >  2:2363877/1‑91 (MQ=255)

                                      aaaCATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCac                                                      >  1:2521092/1‑91 (MQ=255)

                                      aaaCATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCac                                                      >  2:2744821/1‑91 (MQ=255)

                                        aCATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCacta                                                    <  2:430216/91‑1 (MQ=255)

                                        aCATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCacta                                                    <  1:2649878/91‑1 (MQ=255)

                                         cATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCactaa                                                   <  2:3812875/91‑1 (MQ=255)

                                           tCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATACAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCactaact                                                 >  1:3870952/1‑91 (MQ=255)

                                           tCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCactaact                                                 >  1:3179286/1‑91 (MQ=255)

                                            cacaTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCactaacta                                                >  1:1589676/1‑91 (MQ=255)

                                             gaccagatttagcacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAg                                               >  1:1329909‑M1/46‑91 (MQ=255)

                                             acaTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAg                                               >  2:3315348/1‑91 (MQ=255)

                                             acaTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAg                                               >  1:1808746/1‑91 (MQ=255)

                                             acaTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAg                                               >  1:1004550/1‑91 (MQ=255)

                                                tAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCAt                                            >  1:2478231/1‑91 (MQ=255)

                                                tAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCAt                                            <  1:2941328/91‑1 (MQ=255)

                                                  gTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCt                                          >  1:2199659/1‑91 (MQ=255)

                                                      ttGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCacta                                                    >  1:2810203/1‑77 (MQ=255)

                                                       tgtgCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTc                                     <  1:2259726/91‑1 (MQ=255)

                                                       tgtgCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTc                                     >  2:3690385/1‑91 (MQ=255)

                                                        gtgCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCg                                    >  1:3667069/1‑91 (MQ=255)

                                                         cacaacaattcaaacaaacaatcccgaataaatAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGa                                   >  1:144880‑M1/34‑91 (MQ=255)

                                                           cGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATg                                 >  1:84591/1‑91 (MQ=255)

                                                           cGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATg                                 >  2:418294/1‑91 (MQ=255)

                                                              caattcaaacaaacaatcccgaataaatAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGttt                              >  2:1206013‑M1/29‑91 (MQ=255)

                                                              cGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGttt                              <  2:748706/91‑1 (MQ=255)

                                                              cGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGttt                              >  2:534538/1‑91 (MQ=255)

                                                                attcaaacaaacaatcccgaataaatAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGtttt                             >  2:1352212‑M1/27‑91 (MQ=255)

                                                                 gCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTttta                           <  1:2878746/91‑1 (MQ=255)

                                                                  cGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttat                          <  2:472275/91‑1 (MQ=255)

                                                                  cGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttat                          >  1:1383255/1‑91 (MQ=255)

                                                                   ggATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttatt                         <  2:2447690/91‑1 (MQ=255)

                                                                   ggATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttatt                         >  1:3756858/1‑91 (MQ=255)

                                                                   ggATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttatt                         <  1:3018749/91‑1 (MQ=255)

                                                                    gATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttattt                        >  2:2819295/1‑91 (MQ=255)

                                                                     aTCCTGTAATTGCTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTtttattta                       <  2:3231470/91‑1 (MQ=255)

                                                                         tGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCg                   <  1:1096752/91‑1 (MQ=255)

                                                                         tGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCg                   <  1:429714/91‑1 (MQ=255)

                                                                          gTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCgg                  <  2:1916644/91‑1 (MQ=255)

                                                                          gTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCgg                  >  1:1231663/1‑91 (MQ=255)

                                                                          gTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCgg                  <  2:1719313/91‑1 (MQ=255)

                                                                           tAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCggg                 <  1:1965558/91‑1 (MQ=255)

                                                                            aaTTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGa                <  2:1729780/91‑1 (MQ=255)

                                                                            aaTTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGa                <  1:2041030/91‑1 (MQ=255)

                                                                             aTTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAt               <  1:1536927/91‑1 (MQ=255)

                                                                             aTTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAt               >  1:588041/1‑91 (MQ=255)

                                                                              ttGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAtt              <  1:3429530/91‑1 (MQ=255)

                                                                                   cATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttg         <  2:1808746/91‑1 (MQ=255)

                                                                                   aataaatAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttg         >  1:20259‑M1/8‑91 (MQ=255)

                                                                                    aTTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGAttgtttgt        <  2:3870952/91‑1 (MQ=255)

                                                                                        taAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGa    <  1:1703436/91‑1 (MQ=255)

                                                                                        taAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGa    >  2:2090216/1‑91 (MQ=255)

                                                                                          AAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAAt  <  1:105304‑M1/91‑1 (MQ=255)

AGAACATGTCAAAATAGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAA‑CATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAAT  >  USA300TCH1516_ALE/1130946‑1131126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.