| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1255979 | 129 (0.680) | 26 (0.160) | 14/134 | NT | 19.9% | intergenic (+195/+49) | rplS/USA300HOU_RS06250 | 50S ribosomal protein L19/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1255992 | 102 (0.640) | intergenic (+208/+36) | rplS/USA300HOU_RS06250 | 50S ribosomal protein L19/hypothetical protein | |||||
Only 100 of 322 total aligned reads displayed.
TTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATA > USA300TCH1516_ALE/1255889‑1256068 | ttAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGT > 2:1855122‑M1/1‑91 (MQ=255)ctatatttggcattatatgtagtattattttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGt > 2:1756993‑M1/79‑91 (MQ=255)ctatatttggcattatatgtagtattattttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGt < 2:496408‑M1/13‑1 (MQ=255) tAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTg < 2:2607485/91‑1 (MQ=255) aaTGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGc > 2:153559/1‑91 (MQ=255) aTGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTcct < 1:1088112‑M1/91‑4 (MQ=255) gTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCAt < 2:2187467/91‑1 (MQ=255) gTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCAt < 2:3509836/91‑1 (MQ=255) tggcattatatgtagtattattttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGTGCCATTg > 2:142665‑M1/72‑91 (MQ=255) tggcattatatgtagtattattttcacgagataaaaaaaaaaaaaataatgttgctacgcatatatttaatAAATCTACTAAGTGCCATTg > 2:804783‑M1/72‑91 (MQ=255) aaaGTTGATAATGTCATTGTTTATTCCGTCTCTATTCTTATCGTGTTTGCTCATGATGGTTATATAAACAAAAATCTACTAAGTGCCATTg < 2:1890862/91‑1 (MQ=255) aaaGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTg < 1:744976/91‑1 (MQ=255) aaGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGa > 2:2943087/1‑91 (MQ=255) aGTTGATCATGTAATTGTTTATTCCTTCTCTATTCAGAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGaa < 2:3452651/91‑1 (MQ=255) gTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGaaa > 1:100622/1‑91 (MQ=255) gTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGaaa < 2:3481738/91‑1 (MQ=255) ttGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGaaaa < 1:1843883/91‑1 (MQ=255) gATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAgg > 1:3482602/1‑91 (MQ=255) gATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAgg > 1:2346355/1‑91 (MQ=255) aTAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGa < 1:698567‑M2/91‑2 (MQ=255) tAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGac < 1:2186321‑M2/91‑3 (MQ=255) tAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGac > 2:2233506‑M2/1‑89 (MQ=255) atgtagtattattttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGTGCCATTGAAAAGG‑ACt > 2:1604090‑M1/63‑91 (MQ=255) aTGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGactt > 1:2054420‑M2/1‑87 (MQ=255) gtagtattattttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGTGCCATTGAAAAGG‑ACTta > 1:1780300‑M1/61‑91 (MQ=255) gTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttag < 2:1470344‑M2/91‑7 (MQ=255) agtattattttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGTGCCATTGAAAAGG‑ACTtagt > 2:1399229‑M1/59‑91 (MQ=255) aaTTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTccttttcaatggcacttagta < 1:2568838‑M1/91‑22 (MQ=255) tattcttttcacgagatgggcaagacaaaaataatgttgctacgcatatatttaatAAATCTACTAAGTGCCATTGAAAAGG‑ACTtagtag > 1:3233058‑M1/57‑91 (MQ=255) ttGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTccttttcaatggcacttagtaga < 2:3037318‑M1/91‑24 (MQ=255) ttGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagtaga < 1:1066033‑M2/91‑11 (MQ=255) tGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagtagag > 1:529500‑M2/1‑80 (MQ=255) ttATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATtta > 2:3109081/1‑91 (MQ=255) aTTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGa > 1:3698196/1‑70 (MQ=255) aTTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGa < 2:3698196/70‑1 (MQ=255) aTTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATttatt < 2:552662/91‑1 (MQ=255) ttCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATttatta < 2:3751286/91‑1 (MQ=255) ctctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAatata < 1:1253415/91‑1 (MQ=255) ctctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAatata > 1:135642/1‑91 (MQ=255) tctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAatatat < 1:3549433/91‑1 (MQ=255) tctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAatatat < 1:800721/91‑1 (MQ=255) ctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATg > 2:1212694/1‑91 (MQ=255) ctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGT‑CCTTTTCAATGGcacttagtagatttttgtttatataa > 1:882666‑M2/1‑65 (MQ=255) tATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGc > 1:308565/1‑91 (MQ=255) tCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTa > 1:2742729/1‑91 (MQ=255) tCATAACGTGTTTGCACAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTa > 1:3311136/1‑91 (MQ=255) cATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAg > 2:1680377/1‑91 (MQ=255) tAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCa < 1:1015055/91‑1 (MQ=255) aaCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCaa > 2:1997506/1‑91 (MQ=255) aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAAc > 1:2706753/1‑91 (MQ=255) aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAAc < 2:1041332/91‑1 (MQ=255) aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAAc < 1:2121115/91‑1 (MQ=255) aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAAc > 1:2092387/1‑91 (MQ=255) gtgtTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACat < 2:663694/91‑1 (MQ=255) tgtTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACatt > 1:496408/1‑91 (MQ=255) ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagtagacttttgtttatataaccattttgagcaaac < 1:2746873‑M2/91‑41 (MQ=255) ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACattatt < 1:1941625/91‑1 (MQ=255) ttGCCCAAAATGGTTATACAAACAAAAATCTACTACGTGCCATTGAAAAGG‑ACTTAGTAGCTTTATTACATATATGCGTAGCAACattatc > 2:881418/1‑90 (MQ=255) gCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTAtttt > 2:765207/1‑91 (MQ=255) tCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAATTATATGCGTAGCAACATTATTTTTg > 1:3618148/1‑91 (MQ=255) cAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGt > 2:2862340/1‑91 (MQ=255) aaaaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTc > 1:3215789/1‑91 (MQ=255) aTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTg < 1:813344/91‑1 (MQ=255) tGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGc < 2:290852/91‑1 (MQ=255) ggTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGcc < 2:1066033/91‑1 (MQ=255) gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc > 1:222650/1‑91 (MQ=255) gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc > 1:226566/1‑91 (MQ=255) gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc > 1:565760/1‑91 (MQ=255) gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc < 1:687630/91‑1 (MQ=255) taAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCg < 2:2701709/91‑1 (MQ=255) aaaCAAAAATCTACTAAGTGCCATTGAAAAGGacttagtagatttttgtttatatatccattttgagcaaacacgttatggatagagaagg < 2:2144838‑M2/91‑60 (MQ=255) ttaatAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTg < 1:1412674‑M1/86‑1 (MQ=255) aaaaTCTACTAAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataa < 2:2499927‑M2/91‑65 (MQ=255) aaaaTCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGaaaa > 2:1913865/1‑91 (MQ=255) AAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat < 2:3272861‑M1/91‑1 (MQ=255) AAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat < 2:3235129‑M1/91‑1 (MQ=255) AATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaata < 1:3867289‑M1/91‑1 (MQ=255) AATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaata < 1:293457‑M1/91‑1 (MQ=255) TCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaataat > 1:549138‑M1/1‑91 (MQ=255) TCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaataat < 1:2953232‑M1/91‑1 (MQ=255) ctactaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaat < 2:870744‑M2/91‑70 (MQ=255) CTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata < 1:3509275‑M1/91‑1 (MQ=255) CTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata < 1:2856261‑M1/91‑1 (MQ=255) CTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata < 2:2103877‑M1/91‑1 (MQ=255) tactaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgactagagaaggaataaacaatt < 1:2568868‑M2/91‑71 (MQ=255) actaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaataatta < 2:3574316‑M2/91‑72 (MQ=255) actaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaatta < 1:2407600‑M2/91‑72 (MQ=255) ctaAGTccttttcaatggcacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac > 1:882190‑M1/1‑6 (MQ=255) ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac < 1:1330776‑M2/91‑73 (MQ=255) CTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTCGCAACATTATTTTTGTCTTGCCCATCTCGCGAAAATAAtacta < 1:3882284‑M1/91‑1 (MQ=255) CTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta < 1:2139310‑M1/91‑1 (MQ=255) CTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta > 1:1219222‑M1/1‑91 (MQ=255) CTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta < 1:1612480‑M1/91‑1 (MQ=255) CTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta > 1:2401681‑M1/1‑91 (MQ=255) CTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta < 2:2787875‑M1/91‑1 (MQ=255) TAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtactac < 1:1708129‑M1/91‑1 (MQ=255) aaGTccttttcaatggcacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacat > 2:2528557‑M1/1‑4 (MQ=255) aaGTccttttcaatggcacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacat < 2:1853788‑M1/91‑88 (MQ=255) gTccttttcaatggcacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacatta < 1:1057404‑M1/91‑90 (MQ=255) gTccttttcaatggcacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacatta < 2:1941625‑M1/91‑90 (MQ=255) | TTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATA > USA300TCH1516_ALE/1255889‑1256068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |