| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1611738 | 154 (0.810) | 17 (0.100) | 14/148 | NT | 10.5% | coding (711/738 nt) | rluB | Ribosomal large subunit pseudouridine synthase B |
| ? | USA300TCH1516_ALE | = 1611757 | 146 (0.830) | coding (692/738 nt) | rluB | Ribosomal large subunit pseudouridine synthase B | |||||
Only 100 of 249 total aligned reads displayed.
TTAAAAACCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGT > USA300TCH1516_ALE/1611648‑1611828 | ttaAAAACCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTTCTAAATTACGC > 2:354380‑M1/1‑91 (MQ=255)ttaAAAACCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGC > 1:1900143‑M1/1‑91 (MQ=255) taAAAACCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCa < 2:2435821/91‑1 (MQ=255) aaaaaCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCAt < 2:1971157/91‑1 (MQ=255) aaaaaCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCAt < 2:1879895/91‑1 (MQ=255) aaaCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATcc > 1:1715964/1‑90 (MQ=255) aaaCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCa > 1:3769880/1‑91 (MQ=255) aaaCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCa < 2:724194/91‑1 (MQ=255) aCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACt < 1:1669527/91‑1 (MQ=255) aCCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACt > 1:717942/1‑91 (MQ=255) cTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACttt < 1:1734055/91‑1 (MQ=255) tAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACtttt < 2:1384416/91‑1 (MQ=255) tAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACtttt < 1:3515065/91‑1 (MQ=255) tAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTGTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACtttt < 2:3464699/91‑1 (MQ=255) aaaaTTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTa < 1:578774/91‑1 (MQ=255) aaaaTTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTa > 2:1715593/1‑91 (MQ=255) aaaaTTATGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTa < 2:647235/91‑1 (MQ=255) aaaTTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTAc > 2:3124587/1‑91 (MQ=255) aaTTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACt < 1:1322441/91‑1 (MQ=255) aaTTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACt > 2:1748192/1‑91 (MQ=255) aTTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACtt > 2:322579/1‑91 (MQ=255) ttttGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTc < 2:2347761/91‑1 (MQ=255) ttttGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTc < 1:2849581/91‑1 (MQ=255) tttGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACtttt > 2:1464367/1‑85 (MQ=255) tttGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACtttt < 1:1464367/85‑1 (MQ=255) tttGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCa > 1:3099419/1‑91 (MQ=255) ttGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCAt < 2:482712/91‑1 (MQ=255) tgtgAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATg > 1:822928/1‑91 (MQ=255) tgtgAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATg < 2:1046871/91‑1 (MQ=255) gtgAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCctcatgaagtaaaagtga < 2:766348‑M1/91‑19 (MQ=255) gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCctcatgaagtaaaagtgatg < 1:3171459‑M1/91‑21 (MQ=255) gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg > 1:1587508‑M2/1‑90 (MQ=255) gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg < 2:828922‑M2/91‑2 (MQ=255) gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg > 1:3585100‑M2/1‑90 (MQ=255) aaaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCctcatgaagtaaaagtgatgc < 2:3022407‑M1/91‑22 (MQ=255) aaaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCctcatgaagtaaaagtgatgc < 2:2937789‑M1/91‑22 (MQ=255) aaaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgc > 1:246644‑M2/1‑89 (MQ=255) aaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcg > 1:1970669‑M2/1‑88 (MQ=255) aaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCctcatgaagtaaaagtgatgcgt < 1:1391075‑M1/91‑24 (MQ=255) aaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgt < 1:880662‑M2/91‑5 (MQ=255) aaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtca > 1:3773198‑M2/1‑85 (MQ=255) aTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCaa < 2:852751/91‑1 (MQ=255) aTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCaa < 2:1705248/91‑1 (MQ=255) tctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATa < 1:3336939/91‑1 (MQ=255) tctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATa < 2:2644197/91‑1 (MQ=255) tctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATa < 2:3671293/91‑1 (MQ=255) aaaCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtcatttagca < 1:3565937‑M2/91‑14 (MQ=255) aaCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGt < 2:1602760/91‑1 (MQ=255) aaCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGt > 1:2791039/1‑91 (MQ=255) tttGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCctcatgaagtaaaagtgatgcgtcatttagcagaac < 1:2520874‑M1/91‑37 (MQ=255) tttGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCt < 2:1498244/91‑1 (MQ=255) tttGTGATAAATACATATTTTATTTAATTATTGCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCt < 2:42549/91‑1 (MQ=255) ttGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCtt > 1:3865618/1‑91 (MQ=255) tgtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTc < 1:3200906/91‑1 (MQ=255) tgtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTc > 1:1222584/1‑91 (MQ=255) gtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCa > 1:1010028/1‑91 (MQ=255) gtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCa < 2:3742242/91‑1 (MQ=255) gATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCAcc > 2:2587861/1‑91 (MQ=255) tAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAg > 1:759404/1‑91 (MQ=255) tAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAg < 1:459934/91‑1 (MQ=255) tACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCAtt < 2:1293636/91‑1 (MQ=255) aCATATTTTATCTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTc > 2:3208792/1‑91 (MQ=255) atatTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCaa > 1:1933541/1‑91 (MQ=255) tattttatttAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCaaa < 1:292012/91‑1 (MQ=255) attttatttAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAAc < 2:2712084/91‑1 (MQ=255) ttttatttAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAAcc < 1:2236987/91‑1 (MQ=255) tttatttaATTATTTCCCATGTTCTGCTAAATGTCGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaata < 2:135686‑M2/91‑36 (MQ=255) atttaATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgacatttagcagaacatgggaaataattaaataaaa < 1:2591372‑M2/91‑39 (MQ=255) ttaATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGacaac < 1:3014547/91‑1 (MQ=255) taATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGacaaca < 1:1873896/91‑1 (MQ=255) attattTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACAtt < 1:2710788/91‑1 (MQ=255) cccATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatc < 2:2171643‑M2/91‑51 (MQ=255) ccATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGcc > 1:1184945/1‑91 (MQ=255) cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc > 1:1787927/1‑91 (MQ=255) cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc > 1:545041/1‑91 (MQ=255) aTGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCa > 1:600393/1‑91 (MQ=255) aTGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCa > 2:216521/1‑91 (MQ=255) tGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCat > 1:1485956/1‑91 (MQ=255) tGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCat > 1:383021/1‑91 (MQ=255) ttCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCatat > 1:2290940/1‑91 (MQ=255) tGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCa > 1:2893226/1‑91 (MQ=255) tGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCACTCAAACCGACAACATTTAACGGCCCATATTCa > 2:110982/1‑91 (MQ=255) aaaTGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATAc > 1:2522595/1‑91 (MQ=255) aaTGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACg < 1:3415033/91‑1 (MQ=255) aTGACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaat < 1:2508273‑M2/91‑66 (MQ=255) tGACGCctcatgaagtaaaagtgatgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaatt > 1:1815616‑M1/1‑6 (MQ=255) gACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattt < 1:3388889‑M2/91‑68 (MQ=255) gACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACgaga < 1:3279310/91‑1 (MQ=255) gACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACgaga > 1:2156089/1‑91 (MQ=255) gACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACgaga > 1:2615707/1‑91 (MQ=255) aCGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGAc > 2:453473/1‑91 (MQ=255) aCGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGAc > 2:1218004/1‑91 (MQ=255) cGCctcatgaagtaaaagtgatgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttt < 1:971951‑M1/91‑89 (MQ=255) cGCctcatgaagtaaaagtgatgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttt > 2:1757986‑M1/1‑3 (MQ=255) gCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaatttttt < 2:3022425‑M2/91‑71 (MQ=255) gCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAg > 2:3822820/1‑91 (MQ=255) cctcatgaagtaaaagtgatgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttttc > 1:2133321‑M1/1‑1 (MQ=255) cctcatgaagtaaaagtgatgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttttc > 2:2321100‑M1/1‑1 (MQ=255) cATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttttc < 2:1573827‑M2/91‑72 (MQ=255) cATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGt > 2:527295/1‑91 (MQ=255) | TTAAAAACCTAAAATTTTGTGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGT > USA300TCH1516_ALE/1611648‑1611828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |