BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1611738	154 (0.810)	17 (0.100)	14/148	NT	10.5%	coding (711/738 nt)	rluB	Ribosomal large subunit pseudouridine synthase B
*	?	USA300TCH1516_ALE	= 1611757	146 (0.830)	17 (0.100)	14/148	NT	10.5%	coding (692/738 nt)	rluB	Ribosomal large subunit pseudouridine synthase B

Only 100 of 205 total aligned reads displayed.

TGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTTGATGACCAA  >  USA300TCH1516_ALE/1611667‑1611847

 gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg                                                                                           >  1:2133321‑M2/1‑90 (MQ=255)

 gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg                                                                                           <  2:828922‑M2/91‑2 (MQ=255)

 gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg                                                                                           >  1:1587508‑M2/1‑90 (MQ=255)

 gAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGg                                                                                           >  2:2321100‑M2/1‑90 (MQ=255)

  aaaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgc                                                                                          >  1:246644‑M2/1‑89 (MQ=255)

   aaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcg                                                                                         >  2:1757986‑M2/1‑88 (MQ=255)

   aaaaaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcg                                                                                         >  1:2901111‑M2/1‑88 (MQ=255)

      aaTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtca                                                                                      >  1:1815616‑M2/1‑85 (MQ=255)

       aTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCaa                                                                                     <  2:852751/91‑1 (MQ=255)

       aTTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCaa                                                                                     >  2:2843961/1‑91 (MQ=255)

         tctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATa                                                                                   <  1:3168421/91‑1 (MQ=255)

         tctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATa                                                                                   <  2:3671293/91‑1 (MQ=255)

         tctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATa                                                                                   <  2:2644197/91‑1 (MQ=255)

          ctcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATac                                                                                  >  1:1548285/1‑91 (MQ=255)

           tcAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATaca                                                                                 >  1:2953230/1‑91 (MQ=255)

            cAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATacac                                                                                <  1:3667228/91‑1 (MQ=255)

             aaaCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtcatttagca                                                                               <  1:3565937‑M2/91‑14 (MQ=255)

              aaCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGt                                                                              <  1:870945/91‑1 (MQ=255)

              aaCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGt                                                                              <  2:1602760/91‑1 (MQ=255)

               aCTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTc                                                                             <  2:2258186/91‑1 (MQ=255)

                 tttGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCt                                                                           <  2:1498244/91‑1 (MQ=255)

                 tttGTGATAAATACATATTTTATTTAATTATTGCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCt                                                                           <  2:42549/91‑1 (MQ=255)

                  ttGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCtt                                                                          <  1:2157302/91‑1 (MQ=255)

                  ttGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCtt                                                                          >  1:3865618/1‑91 (MQ=255)

                   tgtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTc                                                                         >  1:1222584/1‑91 (MQ=255)

                   tgtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTc                                                                         <  1:3185089/91‑1 (MQ=255)

                    gtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCa                                                                        >  1:1010028/1‑91 (MQ=255)

                    gtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCa                                                                        >  2:1432823/1‑91 (MQ=255)

                    gtgATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCa                                                                        <  2:3742242/91‑1 (MQ=255)

                      gagaaaTACATATTGTATTTAATTATTTCCCAGGTTCTGCTGAATGACGCTTCACTGTTACTTCATGAGGCGTCAATACACGTCCTGCAcc                                                                      <  2:1400713/88‑1 (MQ=255)

                      gATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCAcc                                                                      >  2:2587861/1‑91 (MQ=255)

                        tAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAg                                                                    <  1:459934/91‑1 (MQ=255)

                        tAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAg                                                                    <  2:50996/91‑1 (MQ=255)

                        tAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAg                                                                    <  1:3251401/91‑1 (MQ=255)

                            tACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCAtt                                                                >  1:331175/1‑91 (MQ=255)

                            tACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCAtt                                                                <  2:675510/91‑1 (MQ=255)

                            tACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCAtt                                                                >  2:3087015/1‑91 (MQ=255)

                             aCATATTTTATCTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTc                                                               >  2:3208792/1‑91 (MQ=255)

                               atatTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCaa                                                             >  1:1933541/1‑91 (MQ=255)

                                  ttttatttAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAAcc                                                          >  1:56160/1‑91 (MQ=255)

                                  ttttatttAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAAcc                                                          >  1:1660522/1‑91 (MQ=255)

                                  ttttatttAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAAcc                                                          <  1:2236987/91‑1 (MQ=255)

                                   tttatttaATTATTTCCCATGTTCTGCTAAATGTCGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaata                                                         <  2:135686‑M2/91‑36 (MQ=255)

                                     tatttaATTATTTCCCATGTTCTGCTAAATGACGCACCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGac                                                       <  2:3505216/91‑1 (MQ=255)

                                      atttaATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgacatttagcagaacatgggaaataattaaataaaa                                                      <  1:2591372‑M2/91‑39 (MQ=255)

                                      atttaATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGaca                                                      <  2:1279342/91‑1 (MQ=255)

                                       tttaATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGacaa                                                     >  1:886055/1‑91 (MQ=255)

                                         taATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGacaaca                                                   <  1:1874272/91‑1 (MQ=255)

                                          aaTTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACAt                                                  <  2:1136923/91‑1 (MQ=255)

                                                 tCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAgg                                           >  1:1753695/1‑91 (MQ=255)

                                                  cccATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatc                                          <  2:2171643‑M2/91‑51 (MQ=255)

                                                  cccATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGc                                          >  2:166986/1‑91 (MQ=255)

                                                   ccATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGcc                                         >  1:1184945/1‑91 (MQ=255)

                                                    cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc                                        >  1:1787927/1‑91 (MQ=255)

                                                    cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc                                        >  1:545041/1‑91 (MQ=255)

                                                    cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc                                        >  1:2664652/1‑91 (MQ=255)

                                                    cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc                                        <  2:2460986/91‑1 (MQ=255)

                                                    cATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGccc                                        <  2:1933541/91‑1 (MQ=255)

                                                      tGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCat                                      >  1:383021/1‑91 (MQ=255)

                                                       gTTCTGCTAAATGACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaa                                     <  1:2520874‑M2/91‑56 (MQ=255)

                                                           tGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCa                                 >  1:378338/1‑91 (MQ=255)

                                                           tGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCa                                 >  1:2740445/1‑91 (MQ=255)

                                                           tGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCa                                 >  2:1709365/1‑91 (MQ=255)

                                                            gCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCaa                                >  1:774796/1‑91 (MQ=255)

                                                            gCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCaa                                >  1:1714158/1‑91 (MQ=255)

                                                            gCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCaa                                >  1:2802666/1‑91 (MQ=255)

                                                              tAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATa                              <  1:1984237/91‑1 (MQ=255)

                                                                aaTGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACg                            >  1:718674/1‑91 (MQ=255)

                                                                 aTGACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaat                           <  1:2508273‑M2/91‑66 (MQ=255)

                                                                 aTGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACga                           >  1:1280534/1‑91 (MQ=255)

                                                                 aTGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACga                           >  1:285349/1‑91 (MQ=255)

                                                                 aTGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACga                           <  1:3038374/91‑1 (MQ=255)

                                                                   gACGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattt                         <  1:3388889‑M2/91‑68 (MQ=255)

                                                                   gACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACgaga                         >  1:2615707/1‑91 (MQ=255)

                                                                    aCGCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaatttt                        <  1:1391075‑M2/91‑69 (MQ=255)

                                                                    aCGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGAc                        >  2:453473/1‑91 (MQ=255)

                                                                    aCGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGAc                        >  2:1218004/1‑91 (MQ=255)

                                                                     cGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACa                       >  2:817091/1‑91 (MQ=255)

                                                                      gCATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaatttttt                      <  2:3022407‑M2/91‑71 (MQ=255)

                                                                      gCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAg                      >  2:3822820/1‑91 (MQ=255)

                                                                       cATCACTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttttc                     <  2:1573827‑M2/91‑72 (MQ=255)

                                                                       cATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGt                     >  2:527594/1‑91 (MQ=255)

                                                                       cATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATGCACTTCGAGACAgc                     >  2:526522/1‑90 (MQ=255)

                                                                         tCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCat                                      >  2:2068937/1‑72 (MQ=255)

                                                                         tCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCat                                      <  1:2068937/72‑1 (MQ=255)

                                                                          cACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTc                  >  1:704828/1‑91 (MQ=255)

                                                                           ccTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCg                 <  2:3147673/90‑1 (MQ=255)

                                                                            cTTTTACTTCATGAGgcgtcatttagcagaacatgggaaataattaaataaaatatgtatttatcacaaagtttgagaattttttcacaaa                <  1:623628‑M2/91‑77 (MQ=255)

                                                                             ttttACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTc               >  2:146034/1‑91 (MQ=255)

                                                                             ttttACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTc               >  2:2105691/1‑91 (MQ=255)

                                                                              tttACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCa              <  1:3282958/91‑1 (MQ=255)

                                                                               ttACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCAc             <  1:146034/91‑1 (MQ=255)

                                                                                tACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACt            >  2:763270/1‑91 (MQ=255)

                                                                                  cTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTtg          <  1:2314017/91‑1 (MQ=255)

                                                                                     cATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTtgatg       <  1:97277/91‑1 (MQ=255)

                                                                                      aTGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTtgatga      >  1:3323669/1‑91 (MQ=255)

                                                                                      aTGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTtgatga      <  1:3437560/91‑1 (MQ=255)

                                                                                       tGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTTGATGAc     <  2:1941672/91‑1 (MQ=255)

                                                                                        gAGTCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTTGATGAcc    <  1:3497628/91‑1 (MQ=255)

                                                                                          ggCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTTGATGACCaa  <  2:3587445/91‑1 (MQ=255)

TGAAAAAATTCTCAAACTTTGTGATAAATACATATTTTATTTAATTATTTCCCATGTTCTGCTAAATGACGCATCACTTTTACTTCATGAGGCGTCAATACACGTCCTTCACCAGCATTCAAACCGACAACATTTAAAGGCCCATATTCAATACGAGACAGTTTCGTCACTTGATGACCAA  >  USA300TCH1516_ALE/1611667‑1611847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.