BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1676788	181 (0.950)	24 (0.130)	14/156	NT	11.7%	intergenic (‑344/‑75)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1676835	186 (1.000)	24 (0.130)	14/156	NT	11.7%	intergenic (‑391/‑28)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase

Only 100 of 246 total aligned reads displayed.

TAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGG  >  USA300TCH1516_ALE/1676699‑1676878

 aaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTc                                                                                          <  1:720625/91‑1 (MQ=255)

 aaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTc                                                                                          >  2:2860945/1‑91 (MQ=255)

 aaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTc                                                                                          >  1:2207416/1‑91 (MQ=255)

  aaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTcc                                                                                         <  2:3257257/91‑1 (MQ=255)

     gCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCAt                                                                                      >  2:2109249/1‑91 (MQ=255)

        aGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGa                                                                                   >  1:432192/1‑91 (MQ=255)

          tGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAg                                                                                 >  2:3586910/1‑91 (MQ=255)

            aCTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTa                                                                               <  1:1716345/91‑1 (MQ=255)

               acacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAg                                                                            <  2:1847485/91‑1 (MQ=255)

                cacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataaca                                                                           <  1:1546971‑M1/91‑18 (MQ=255)

                cacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGc                                                                           <  2:1147542/91‑1 (MQ=255)

                  cTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATCTACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCat                                                                         <  2:2942173/91‑1 (MQ=255)

                  cTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTGAAATATTAACTCGTCCCATGGAAGTAAAGCat                                                                         <  2:3812846/91‑1 (MQ=255)

                  cTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagc                                                                         <  1:459157‑M1/91‑20 (MQ=255)

                     aTTTGGTTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAtt                                                                      >  1:3022474/1‑91 (MQ=255)

                      tttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAttt                                                                     <  2:1679084/91‑1 (MQ=255)

                       ttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTa                                                                    >  2:1996731/1‑91 (MQ=255)

                       ttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTa                                                                    >  2:3124059/1‑91 (MQ=255)

                       ttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCACATTTa                                                                    >  2:3572330/1‑91 (MQ=255)

                       ttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGAATATTTa                                                                    >  2:2001374/1‑91 (MQ=255)

                        tGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTAc                                                                   <  1:2082395/91‑1 (MQ=255)

                         gggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTGTTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACt                                                                  <  1:383519/91‑1 (MQ=255)

                         gggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACt                                                                  >  2:2749294/1‑91 (MQ=255)

                         gggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACt                                                                  <  2:3473396/91‑1 (MQ=255)

                           gTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTAt                                                                <  1:3337858/91‑1 (MQ=255)

                            tGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATg                                                               >  1:64399/1‑91 (MQ=255)

                            tGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATg                                                               >  1:2014317/1‑91 (MQ=255)

                            tGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATg                                                               >  1:77357/1‑91 (MQ=255)

                             ggAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGc                                                              <  1:1222347/91‑1 (MQ=255)

                                aCCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGt                                                           <  1:1325272/91‑1 (MQ=255)

                                  cgcgGGTTAAATACGTAACTTATTTAGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTa                                                         <  1:3613466/91‑1 (MQ=255)

                                   gcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAt                                                        <  2:2880163/91‑1 (MQ=255)

                                    cgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAtt                                                       >  2:1169750/1‑91 (MQ=255)

                                     gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgctttact                                                      <  2:1021423‑M1/91‑39 (MQ=255)

                                     gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAttt                                                      >  1:1825688/1‑91 (MQ=255)

                                      ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttactt                                                     <  2:866893‑M1/91‑40 (MQ=255)

                                      ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttactt                                                     <  2:1217122‑M1/91‑40 (MQ=255)

                                      ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAtttt                                                     >  1:3406978/1‑91 (MQ=255)

                                      ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAtttt                                                     >  2:2271267/1‑91 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaatatcagcatagtaaatatgctttacttcc                                                   <  2:2214174‑M1/91‑42 (MQ=255)

                                         tAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttcca                                                  <  1:2490542‑M1/91‑43 (MQ=255)

                                         tAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCa                                                  >  2:3343207/1‑91 (MQ=255)

                                         tAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCa                                                  <  1:3511915/91‑1 (MQ=255)

                                          aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCAt                                                 >  2:2624641/1‑91 (MQ=255)

                                           aaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATg                                                >  2:3351673/1‑91 (MQ=255)

                                             tACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATggg                                              <  2:2622996/91‑1 (MQ=255)

                                             tACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATggg                                              <  2:692809/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                             <  2:1076372/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                             <  2:1039083/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                             <  2:2445552/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                             <  1:1167364/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                             <  2:1075866/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATggga                                             <  2:159019/91‑2 (MQ=255)

                                               cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                            >  1:2389625‑M2/1‑90 (MQ=255)

                                               cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                            >  1:2389818‑M2/1‑90 (MQ=255)

                                               cGTAACTTATTTTGTATTATACACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                            <  1:2333450‑M2/91‑2 (MQ=255)

                                                  aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgag                                         <  1:2583306‑M1/91‑52 (MQ=255)

                                                  aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                         <  1:3138899/91‑1 (MQ=255)

                                                   aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagt                                        <  1:1686765‑M1/91‑53 (MQ=255)

                                                   aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                        <  1:1435426/91‑1 (MQ=255)

                                                      tATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaa                                     <  2:3636648‑M1/91‑56 (MQ=255)

                                                       aTTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                    <  1:3691085/91‑1 (MQ=255)

                                                        ttttGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaata                                   <  2:381245‑M1/91‑58 (MQ=255)

                                                         tttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGt                                  <  2:2320926/91‑1 (MQ=255)

                                                           tGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTAt                                <  2:818782/91‑1 (MQ=255)

                                                           tGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTAt                                >  2:30128/1‑91 (MQ=255)

                                                           tGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTAt                                >  1:791708/1‑91 (MQ=255)

                                                           tGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTCATTTTCCATGGGGCGTTTTCATGTAt                                <  2:2207416/91‑1 (MQ=255)

                                                            gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                               <  2:914743/91‑1 (MQ=255)

                                                            gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                               <  2:1427646/91‑1 (MQ=255)

                                                            gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                               >  1:586783/1‑91 (MQ=255)

                                                             tattatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATga                              >  2:3520945/1‑91 (MQ=255)

                                                              attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgag                             <  2:643383/91‑1 (MQ=255)

                                                              attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgag                             >  2:2701104/1‑91 (MQ=255)

                                                                 atataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgaggag                          <  2:19550/91‑1 (MQ=255)

                                                                  tataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGgaga                         <  2:422297/91‑1 (MQ=255)

                                                                   ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                        <  1:3067339/91‑1 (MQ=255)

                                                                   ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                        <  2:136679/91‑1 (MQ=255)

                                                                    taCAATTTAAGATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                       <  1:54569/91‑1 (MQ=255)

                                                                    taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                       >  2:2503470/1‑91 (MQ=255)

                                                                    taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                       >  1:3810621/1‑91 (MQ=255)

                                                                    taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                       <  2:3287703/91‑1 (MQ=255)

                                                                      cAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGT‑ACTT‑CCATGGGAcgagttaatattttaaattgtatatc                   <  2:1184104‑M2/91‑27 (MQ=255)

                                                                         tttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAtt                  <  2:3260583/91‑1 (MQ=255)

                                                                         tttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAtt                  <  2:2535416/91‑1 (MQ=255)

                                                                          ttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTa                 <  1:3238687/91‑1 (MQ=255)

                                                                           tAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTAt                <  1:2931251/91‑1 (MQ=255)

                                                                              aaTATTAACTCGTCCCATGGAAGTAGAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc             <  2:3652395/91‑1 (MQ=255)

                                                                              aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc             <  1:931708/91‑1 (MQ=255)

                                                                              aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc             <  2:2344306/91‑1 (MQ=255)

                                                                               atatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCa            >  1:2857576/1‑91 (MQ=255)

                                                                                tatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaa           >  1:2676628/1‑91 (MQ=255)

                                                                                tatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaa           >  2:1904783/1‑91 (MQ=255)

                                                                                tatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaa           >  1:2232283/1‑91 (MQ=255)

                                                                                 atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaa          <  2:2818949/91‑1 (MQ=255)

                                                                                     aCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGat      >  1:2809661/1‑91 (MQ=255)

                                                                                      cTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagtt     <  1:2583325‑M2/91‑41 (MQ=255)

                                                                                       tCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat    >  1:1003353/1‑91 (MQ=255)

                                                                                        cGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttac   <  1:2648072‑M1/91‑90 (MQ=255)

                                                                                         gccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttacg  >  2:2911085‑M1/1‑1 (MQ=255)

TAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGG  >  USA300TCH1516_ALE/1676699‑1676878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.