| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1789630 = | 195 (1.020) | 18 (0.110) | 12/138 | NT | 11.0% | intergenic (‑111/+59) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase |
| ? | USA300TCH1516_ALE | 1789673 = | 123 (0.750) | intergenic (‑154/+16) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase | |||||
Only 100 of 274 total aligned reads displayed.
TATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCA > USA300TCH1516_ALE/1789540‑1789719 | tATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATa < 2:443695/91‑1 (MQ=255) aaaacagaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAg > 2:54675‑M1/90‑91 (MQ=255) aaaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAg < 1:3161989‑M1/2‑1 (MQ=255) aaaacaaaaccatgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAg > 1:3520129‑M1/90‑91 (MQ=255) aTGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAg < 2:1030101/91‑1 (MQ=255) aaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGt < 1:1300218‑M1/3‑1 (MQ=255) aaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGt > 2:1190003‑M1/89‑91 (MQ=255) aaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGt < 1:2163345‑M1/3‑1 (MQ=255) aaacaaaaccccgagagactcttagaagaagaaggttataatgaaaagccgaattacggagaagaagattaatattacactataaataAGt < 2:271608‑M1/3‑1 (MQ=255) gtgtTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTc > 2:852580/1‑91 (MQ=255) aacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTc < 2:1567070‑M1/4‑1 (MQ=255) tgtTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCa < 1:728506/91‑1 (MQ=255) tgtTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCa < 2:35197/91‑1 (MQ=255) acaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCa > 2:307965‑M1/87‑91 (MQ=255) acaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCa < 2:1666070‑M1/5‑1 (MQ=255) acaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCa > 1:2192530‑M1/87‑91 (MQ=255) acaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCa > 1:1061995‑M1/87‑91 (MQ=255) caaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAt < 2:1279526‑M1/6‑1 (MQ=255) caaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAt > 2:114899‑M1/86‑91 (MQ=255) ttATACTTTATGGAATCAGTATAGCATATTATATGAACTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTCTTATAAAAAATAGTCAtt > 2:2886450/1‑91 (MQ=255) aaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAtt < 2:287995‑M1/7‑1 (MQ=255) tataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtta > 2:1240292/1‑91 (MQ=255) tataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtta < 1:1232474/91‑1 (MQ=255) ataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttac < 1:264192/91‑1 (MQ=255) ataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttac > 2:652315/1‑91 (MQ=255) aaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAttac > 1:2617981‑M1/83‑91 (MQ=255) taCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttact < 1:2803179/91‑1 (MQ=255) taCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttact < 1:333872/91‑1 (MQ=255) tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttacttac > 1:151676/1‑91 (MQ=255) aTGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtacata > 1:1455293/1‑91 (MQ=255) aTGGAATTAGTATAGCATATTATATGAAATTTGAAAGAGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtacata > 1:3257398/1‑91 (MQ=255) tGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtacatac < 2:2546739/91‑1 (MQ=255) tGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtacatac < 2:2690347/91‑1 (MQ=255) tGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtacatac < 1:620553/91‑1 (MQ=255) agattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTtacataca > 2:579990‑M1/74‑91 (MQ=255) gAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTacatacat > 2:899829/1‑91 (MQ=255) gAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTacatacat > 2:2923833/1‑91 (MQ=255) gAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTacatacat < 1:1796664/91‑1 (MQ=255) aTTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCa < 2:3214308/91‑1 (MQ=255) tAGTGTAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAc > 1:3063783/1‑91 (MQ=255) tAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAc > 2:2158339/1‑91 (MQ=255) tAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAc < 1:94732/91‑1 (MQ=255) aGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAcg < 2:3555973/91‑1 (MQ=255) gTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAcgc < 2:3862869/91‑1 (MQ=255) gTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAcgc < 1:170406/91‑1 (MQ=255) ataGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgt > 2:725953/1‑91 (MQ=255) gCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacg < 1:432855/91‑1 (MQ=255) cATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacgt > 2:369530/1‑91 (MQ=255) atatTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacgta > 1:3638171/1‑91 (MQ=255) atatTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacgta < 2:2506128/91‑1 (MQ=255) tattatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtaca < 1:2928865/72‑1 (MQ=255) tattatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTaa > 1:1569531/1‑91 (MQ=255) tattatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTaa > 1:1567070/1‑91 (MQ=255) ttatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAg > 1:1279526/1‑91 (MQ=255) ttatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAg > 2:2849904/1‑91 (MQ=255) aggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAg > 1:3303886‑M1/57‑91 (MQ=255) gttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTa > 1:28852‑M1/55‑91 (MQ=255) atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTa < 1:703432/91‑1 (MQ=255) tatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTaa > 2:1712659/1‑91 (MQ=255) tatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTaa > 2:2667165/1‑91 (MQ=255) atGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAAt > 2:3646990/1‑91 (MQ=255) tGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttacttac > 1:1729102/1‑64 (MQ=255) tGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATg > 2:1477087/1‑91 (MQ=255) tGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATg > 1:3561682/1‑91 (MQ=255) tattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGa > 2:2315988‑M1/51‑91 (MQ=255) ttgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt > 2:3257729‑M1/49‑91 (MQ=255) ttgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt > 1:444954‑M1/49‑91 (MQ=255) ttgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt > 2:1031324‑M1/49‑91 (MQ=255) aaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt > 2:206579/1‑91 (MQ=255) tgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtt > 1:2699182‑M1/48‑91 (MQ=255) tgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtt > 2:466011‑M1/48‑91 (MQ=255) tttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtta < 2:2612729/91‑1 (MQ=255) ttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttat > 2:3350279/1‑91 (MQ=255) gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt > 2:2431951/1‑91 (MQ=255) gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt > 1:865411/1‑91 (MQ=255) aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata < 1:3713620/91‑1 (MQ=255) cGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgt < 2:718420/91‑1 (MQ=255) cGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgt > 2:3137473/1‑91 (MQ=255) ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt < 1:896773/91‑1 (MQ=255) ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt > 2:1384312/1‑91 (MQ=255) ttacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTa > 1:1958881‑M1/36‑91 (MQ=255) ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata > 1:1597022/1‑91 (MQ=255) ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata > 2:3488493/1‑91 (MQ=255) gATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAt > 1:564169/1‑91 (MQ=255) atttatttATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc < 2:1717789/91‑1 (MQ=255) tttatttaTCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtct < 1:792188/91‑1 (MQ=255) ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc > 1:112319/1‑91 (MQ=255) ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc < 2:411403/91‑1 (MQ=255) ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc > 1:2542859/1‑91 (MQ=255) cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg < 2:1982838/91‑1 (MQ=255) cTTTTTTATAAAAAATAGTCATCCCTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATCTTAATCTTCTTCTCCg > 2:3773804/1‑91 (MQ=255) ttttttATAAAAAATAGTCATTACTGACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt < 1:3619316/91‑1 (MQ=255) tggataAAGAATAGTCATTACTTACTTAGATCGACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt < 2:3860668/88‑1 (MQ=255) ctataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg > 1:3832558‑M1/10‑91 (MQ=255) ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg > 2:2798633/1‑91 (MQ=255) taAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCgg < 1:2750983/91‑1 (MQ=255) aaaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGc < 2:1098028/91‑1 (MQ=255) aaaaaTAGTCATTACTTACATACATCAACGCATACGTAAAGTAATGACTTATTTATAGTGTAATATTCATCTTCTTCTCAGTAATTCGGCt > 2:2962585/1‑91 (MQ=255) aaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCttt < 1:674449/91‑1 (MQ=255) tAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCa < 2:1777703/91‑1 (MQ=255) | TATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCA > USA300TCH1516_ALE/1789540‑1789719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |