BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1789630 =	195 (1.020)	18 (0.110)	12/138	NT	11.0%	intergenic (‑111/+59)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase
*	?	USA300TCH1516_ALE	1789673 =	123 (0.750)	18 (0.110)	12/138	NT	11.0%	intergenic (‑154/+16)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase

Only 100 of 260 total aligned reads displayed.

ATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAA  >  USA300TCH1516_ALE/1789583‑1789763

tgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtt                                                                                            >  1:1628664‑M1/48‑91 (MQ=255)

aTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtt                                                                                            <  2:1439815/91‑1 (MQ=255)

  ttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttat                                                                                          >  2:3350279/1‑91 (MQ=255)

   tGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatt                                                                                         >  1:638701/1‑91 (MQ=255)

   tGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatt                                                                                         <  1:686982/91‑1 (MQ=255)

    gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                                                                        <  2:2027585/91‑1 (MQ=255)

      aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                                      <  2:2642032/91‑1 (MQ=255)

       aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                     <  1:3713620/91‑1 (MQ=255)

       aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                     <  1:154879/91‑1 (MQ=255)

         cGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgt                                                                                   <  2:718390/91‑1 (MQ=255)

         cGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgt                                                                                   >  2:3137509/1‑91 (MQ=255)

           ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                                 <  1:1208644/91‑1 (MQ=255)

           ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                                 <  1:896773/91‑1 (MQ=255)

           ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                                 >  2:1384312/1‑91 (MQ=255)

           ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                                 <  2:3803273/91‑1 (MQ=255)

           ttttCCGTTGATTTATTTAGCTTTTTTATAAAAAATAGTCATTACTTACATACATCTACGCGTACTTAAAGTAATGACTTATTTATAgtgt                                                                                 <  1:1716824/91‑1 (MQ=255)

            ttacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTa                                                                                >  1:1958881‑M1/36‑91 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                             >  2:3488493/1‑91 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                             >  1:1597022/1‑91 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                             <  2:130179/91‑1 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTCATAGTGTAata                                                                             <  1:87698/91‑1 (MQ=255)

                 gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                                           <  2:1725611/91‑1 (MQ=255)

                 gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                                           >  1:2687970/1‑91 (MQ=255)

                   tGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                                         <  2:1209502/91‑1 (MQ=255)

                    gATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAt                                                                        >  1:564169/1‑91 (MQ=255)

                    gATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAt                                                                        >  1:2871633/1‑91 (MQ=255)

                     atttatttATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                                       <  2:1717788/91‑1 (MQ=255)

                      tttatttaTCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtct                                                                      <  1:792188/91‑1 (MQ=255)

                           ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc                                                                 >  1:112319/1‑91 (MQ=255)

                           ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc                                                                 >  1:2542859/1‑91 (MQ=255)

                           ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc                                                                 <  2:411403/91‑1 (MQ=255)

                             atCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTtctc                                                               <  1:3831161/91‑1 (MQ=255)

                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg                                                             >  2:3773625/1‑91 (MQ=255)

                                ttttttATAAAAAATAGTCATTACTGACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                            <  1:3619316/91‑1 (MQ=255)

                                   tttATAANAAANANTCATTACTTACATACATNAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                                         <  1:422679/91‑1 (MQ=255)

                                   tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                                         <  1:2349063/91‑1 (MQ=255)

                                      ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                      <  2:112319/91‑1 (MQ=255)

                                        aaaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGc                                                    <  2:447015/91‑1 (MQ=255)

                                        aaaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGc                                                    <  2:1098028/91‑1 (MQ=255)

                                         taaataagtcattactttacgtacgcgttgatgtatggaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt                                                   >  1:3264349‑M2/50‑91 (MQ=255)

                                         aaaaaTAGTCATTACTTACATACATCAACGCATACGTAAAGTAATGACTTATTTATAGTGTAATATTCATCTTCTTCTCAGTAATTCGGCt                                                   >  2:2962585/1‑91 (MQ=255)

                                          aaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCtt                                                  <  1:1298914/91‑1 (MQ=255)

                                            aaTAGTCATTACTTACATACATAAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCtttt                                                <  2:1264584/91‑1 (MQ=255)

                                              tAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCa                                              >  2:3102493/1‑91 (MQ=255)

                                              aagtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCa                                              >  1:2699182‑M2/45‑91 (MQ=255)

                                               agtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCaa                                             >  2:355327‑M2/44‑91 (MQ=255)

                                               agtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCaa                                             >  2:1031283‑M2/44‑91 (MQ=255)

                                                GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                            >  2:1433018‑M1/1‑91 (MQ=255)

                                                 TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                                           >  2:3083595‑M1/1‑91 (MQ=255)

                                                 TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                                           <  2:2859491‑M1/91‑1 (MQ=255)

                                                 TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                                           >  2:3641709‑M1/1‑91 (MQ=255)

                                                  CATTACTTACATACATCGACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTaa                                                          >  1:3441300‑M1/1‑75 (MQ=255)

                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                          <  2:640815‑M1/91‑1 (MQ=255)

                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                          >  2:2412984‑M1/1‑91 (MQ=255)

                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                          >  1:2421438‑M1/1‑91 (MQ=255)

                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                          <  1:2609407‑M1/91‑1 (MQ=255)

                                                  CATCACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTaa                                                          <  2:3441300‑M1/75‑1 (MQ=255)

                                                   ATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAAtata                                         <  2:2813166‑M1/91‑1 (MQ=255)

                                                   ATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAAtata                                         <  2:1961062‑M1/91‑1 (MQ=255)

                                                     tactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc                                       >  1:28852‑M2/38‑91 (MQ=255)

                                                       CTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCt                                     >  1:32382‑M1/1‑91 (MQ=255)

                                                         TACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTc                                   >  1:743503‑M1/1‑91 (MQ=255)

                                                          acatacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttct                                  <  1:505375/91‑1 (MQ=255)

                                                           catacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttctt                                 >  1:2928488/1‑91 (MQ=255)

                                                             tacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttct                               <  2:1986856/91‑1 (MQ=255)

                                                                  cAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTaa                          <  2:2171228/91‑1 (MQ=255)

                                                                   aaCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                         <  1:2173870/91‑1 (MQ=255)

                                                                   aaCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                         >  2:2535591/1‑91 (MQ=255)

                                                                     cgcgTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACaa                       >  1:1999311/1‑91 (MQ=255)

                                                                       cgtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtc                     >  1:3630962/1‑91 (MQ=255)

                                                                       cgtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTATTCAATATAACCTTCTTCTTCTAACAAtc                     >  1:2160461/1‑91 (MQ=255)

                                                                        gtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtct                    >  2:386755/1‑91 (MQ=255)

                                                                         tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctc                   >  1:1484228/1‑91 (MQ=255)

                                                                          acgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACActctct                  <  2:2745982/91‑1 (MQ=255)

                                                                          acgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctct                  <  1:1384312/91‑1 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 <  1:2790643/91‑1 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 >  1:839113/1‑91 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 <  2:3561682/91‑1 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCAGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 <  2:2292245/91‑1 (MQ=255)

                                                                            gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa                >  2:2684012/1‑91 (MQ=255)

                                                                            gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa                >  2:2676314/1‑91 (MQ=255)

                                                                              aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg              <  1:2115648/91‑1 (MQ=255)

                                                                               aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTTGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg             <  2:2814706‑M2/80‑1 (MQ=255)

                                                                               aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg             >  2:89524‑M2/12‑91 (MQ=255)

                                                                               aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg             >  2:1180928‑M2/12‑91 (MQ=255)

                                                                               aagtaatcactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg             <  1:1934194‑M2/80‑1 (MQ=255)

                                                                                agtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgt            <  2:560579‑M2/81‑1 (MQ=255)

                                                                                agtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgt            <  2:1512773‑M2/81‑1 (MQ=255)

                                                                                 gtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtt           >  1:2618110‑M2/10‑91 (MQ=255)

                                                                                 gtaatgactTATTTATAGTGTAATATTAATCTTATTCCCCGTAATTAGGCTTTTCAATAGAACCTTCTTCTTCTAACAATCTCTCAAGgtt           >  1:3100632‑M2/10‑91 (MQ=255)

                                                                                   aatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtttt         <  2:287995‑M2/84‑1 (MQ=255)

                                                                                     tgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgt       >  1:1061995‑M2/6‑91 (MQ=255)

                                                                                     tgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgt       >  1:2192530‑M2/6‑91 (MQ=255)

                                                                                     tgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgt       <  2:1666070‑M2/86‑1 (MQ=255)

                                                                                      gactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt      <  2:3229941‑M2/87‑1 (MQ=255)

                                                                                      gactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt      <  2:1569531‑M2/87‑1 (MQ=255)

                                                                                        ctTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCATGgttttgtttt    >  1:3520129‑M2/3‑91 (MQ=255)

                                                                                        ctTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtttt    <  1:3431854‑M2/89‑1 (MQ=255)

                                                                                        ctTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtttt    <  1:3161989‑M2/89‑1 (MQ=255)

                                                                                        ctTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttctgtttt    >  2:54675‑M2/3‑91 (MQ=255)

ATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAA  >  USA300TCH1516_ALE/1789583‑1789763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.