BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2031959	156 (0.820)	22 (0.130)	12/146	NT	12.8%	intergenic (+425/+65)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2031978	157 (0.900)	22 (0.130)	12/146	NT	12.8%	intergenic (+444/+46)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein

Only 100 of 255 total aligned reads displayed.

ATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTCATTAA  >  USA300TCH1516_ALE/2031869‑2032049

aTTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACA                                                                                            <  1:596923‑M1/91‑1 (MQ=255)

 ttGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCacac                                                                                           >  1:1091007/1‑91 (MQ=255)

   gATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGc                                                                                         >  2:1293474/1‑91 (MQ=255)

    aTTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGcc                                                                                        >  1:1760253/1‑91 (MQ=255)

     tttATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCt                                                                                       <  2:384436/91‑1 (MQ=255)

       tATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTaa                                                                                     <  1:536462/91‑1 (MQ=255)

            ccccGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTAc                                                                                >  1:112926/1‑91 (MQ=255)

            ccccGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTAc                                                                                >  1:710518/1‑91 (MQ=255)

             cccGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACg                                                                               >  1:2176093/1‑91 (MQ=255)

             cccGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACg                                                                               <  2:3456111/91‑1 (MQ=255)

                gCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACAtccctccgtagtttag                                                                            <  2:2371288‑M1/91‑17 (MQ=255)

                gCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAg                                                                            <  2:3211787/91‑1 (MQ=255)

                 ccTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACAtccctccgtagtttagg                                                                           <  2:1502310‑M1/91‑18 (MQ=255)

                 ccTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAgg                                                                           >  1:1544229/1‑91 (MQ=255)

                  ctctTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAggg                                                                          <  2:1884678/91‑1 (MQ=255)

                   tctTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGa                                                                         <  2:2800134/91‑1 (MQ=255)

                    cTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAt                                                                        <  2:1089040‑M2/91‑2 (MQ=255)

                       tttATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACAtccctccgtagtttaggcgtgtg                                                                     <  1:3663688‑M1/91‑24 (MQ=255)

                       tttATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACAtccctccgtagtttaggcgtgtg                                                                     <  2:220145‑M1/91‑24 (MQ=255)

                        ttATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtgg                                                                    <  1:3829333‑M2/91‑6 (MQ=255)

                         tATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACAtccctccgtagtttaggcgtgtggc                                                                   <  2:1158831‑M1/91‑26 (MQ=255)

                         tATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACAtccctccgtagtttaggcgtgtggc                                                                   <  1:127023‑M1/91‑26 (MQ=255)

                         tATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggc                                                                   >  2:3072814‑M2/1‑85 (MQ=255)

                         tATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggc                                                                   >  2:2407387‑M2/1‑85 (MQ=255)

                          aTCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggct                                                                  >  2:3882882‑M2/1‑84 (MQ=255)

                          aTCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggct                                                                  >  1:3676000‑M2/1‑84 (MQ=255)

                          aTCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggct                                                                  >  2:1180131‑M2/1‑84 (MQ=255)

                          aTCGTATATAGCATGTCCCTTTTTAAAAGTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggct                                                                  >  2:1061565‑M2/1‑84 (MQ=255)

                           tCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATACAGCCACAtccctccgtagtttaggcgtgtggcta                                                                 <  2:2117297‑M1/91‑28 (MQ=255)

                            cGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGt                                                                >  1:2031327/1‑91 (MQ=255)

                            cGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGt                                                                <  2:1241441/91‑1 (MQ=255)

                             gTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTc                                                               <  1:2202488/91‑1 (MQ=255)

                               atataGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCtt                                                             <  2:1563859/91‑1 (MQ=255)

                                tataGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCttt                                                            <  2:3571722/91‑1 (MQ=255)

                                 ataGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCtttt                                                           >  2:1356645/1‑91 (MQ=255)

                                  taGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCttttt                                                          >  2:2971550/1‑91 (MQ=255)

                                   aGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCtttttt                                                         >  1:2357568/1‑91 (MQ=255)

                                    gCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTg                                                        <  1:3354477/91‑1 (MQ=255)

                                    gCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTg                                                        <  2:112926/91‑1 (MQ=255)

                                     cATGTCCCTTTTTAAAATTACAAGCGTAAATAGTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGa                                                       <  1:3303669/91‑1 (MQ=255)

                                     cATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGa                                                       <  1:2557714/91‑1 (MQ=255)

                                     cATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGa                                                       <  2:3035956/91‑1 (MQ=255)

                                       tGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGAtt                                                     >  1:3860905/1‑91 (MQ=255)

                                       tGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGAtt                                                     >  1:700723/1‑91 (MQ=255)

                                        gTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTg                                                    >  1:310491/1‑91 (MQ=255)

                                         tCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGt                                                   <  1:3721307/91‑1 (MQ=255)

                                                 tAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACat                                           <  2:3125247/91‑1 (MQ=255)

                                                   aaaTTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACatat                                         <  2:3382407/91‑1 (MQ=255)

                                                    aaTTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGAtgtggctatatttgagtctgaatatttatgctt                                        <  1:3589540‑M2/91‑34 (MQ=255)

                                                    aaTTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATc                                        >  2:380234/1‑91 (MQ=255)

                                                    aaTTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATc                                        >  1:1005559/1‑91 (MQ=255)

                                                    aaTCACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATc                                        >  1:2469496/1‑91 (MQ=255)

                                                     aTTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCa                                       >  2:2121926/1‑91 (MQ=255)

                                                     aTTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCa                                       <  2:339844/91‑1 (MQ=255)

                                                      ttACAAGCATAAATATTCAGACTCGAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAg                                      <  2:3619367/91‑1 (MQ=255)

                                                          aaGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGAttt                                  <  2:1383583/91‑1 (MQ=255)

                                                           aGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTa                                 >  2:974093/1‑91 (MQ=255)

                                                            gCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTaa                                >  2:630302/1‑91 (MQ=255)

                                                            gCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTaa                                >  1:2120719/1‑91 (MQ=255)

                                                             cATAAATATTCAGACTCAAATATAGCGACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTaaa                               >  2:2210024/1‑91 (MQ=255)

                                                             cATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTaaa                               >  2:270682/1‑91 (MQ=255)

                                                              aTAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCATATTTAAAt                              <  2:2522665/91‑1 (MQ=255)

                                                              aTAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAAt                              <  1:1835616/91‑1 (MQ=255)

                                                                 aaTATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCAt                           >  2:1639643/1‑91 (MQ=255)

                                                                  atatTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCAtt                          >  1:2140942/1‑91 (MQ=255)

                                                                  atatTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCAtt                          >  2:1945428/1‑91 (MQ=255)

                                                                   tatTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTa                         <  1:3133433/91‑1 (MQ=255)

                                                                   tatTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTa                         <  2:535036/91‑1 (MQ=255)

                                                                      tCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATg                      <  1:1885273/91‑1 (MQ=255)

                                                                       cAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGt                     >  2:2964285/1‑91 (MQ=255)

                                                                         gACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTaa                   >  2:813225/1‑91 (MQ=255)

                                                                          aCTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTaaa                  <  1:1578640/91‑1 (MQ=255)

                                                                          aCTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTaaa                  >  2:1929542/1‑91 (MQ=255)

                                                                           cTCAACTATAGCCACCCGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGAGTTAAATCATTAATGTAAag                 <  1:801165/91‑1 (MQ=255)

                                                                           cTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAag                 >  1:841049/1‑91 (MQ=255)

                                                                           cTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAag                 <  2:59039/91‑1 (MQ=255)

                                                                              aaaTATAGCCACGCGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAgg              <  2:3224504/91‑1 (MQ=255)

                                                                              aaaTATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAgg              >  2:3329946/1‑91 (MQ=255)

                                                                              aaaTATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAgg              <  2:1392042/91‑1 (MQ=255)

                                                                               aaTATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGc             <  2:2632951/91‑1 (MQ=255)

                                                                               aaTATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGc             >  2:433693/1‑91 (MQ=255)

                                                                                  ataGCCACACGCCTAAACTACGGAGGGAtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacg          <  1:1279200‑M2/91‑64 (MQ=255)

                                                                                  ataGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTaa          >  2:941939/1‑91 (MQ=255)

                                                                                    aGCCACAtccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgat        >  2:1061709‑M1/1‑7 (MQ=255)

                                                                                    aGCCACAtccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgat        >  2:1061698‑M1/1‑7 (MQ=255)

                                                                                    aGCCACACGCCTAAACTACGGAGGGAtgtggctatatttgagactgaatattcatgctagtaattttaaaaagggacatgctatatacgat        <  1:1071519‑M2/91‑66 (MQ=255)

                                                                                     gCCACAtccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgata       <  1:3165886‑M1/91‑86 (MQ=255)

                                                                                     gCCACAtccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacaaaa       <  2:2511929‑M1/91‑86 (MQ=255)

                                                                                     gCCACACGCCTAAACTACGGAGGGAtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgata       <  1:2798687‑M2/91‑67 (MQ=255)

                                                                                     gCCACACGCCTAAACTACGGAGGGAtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgata       <  1:3472192‑M2/91‑67 (MQ=255)

                                                                                     gCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTc       >  1:3538477/1‑91 (MQ=255)

                                                                                       cacatccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgataaa     <  1:1060998‑M1/91‑88 (MQ=255)

                                                                                       cacatccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgataaa     <  2:1526624‑M1/91‑88 (MQ=255)

                                                                                       cacatccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgataaa     >  1:586801‑M1/1‑4 (MQ=255)

                                                                                       cacatccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgataaa     >  1:3657958‑M1/1‑4 (MQ=255)

                                                                                        acacGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTCAtt    >  1:2510261/1‑91 (MQ=255)

                                                                                        acacGCCTAAACGACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTCAtt    >  1:2967142/1‑91 (MQ=255)

                                                                                         cacGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTCATta   <  1:984974/91‑1 (MQ=255)

                                                                                         cacGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTCATta   >  1:2623811/1‑91 (MQ=255)

                                                                                          atccctccgtagtttaggcgtgtggctatatttgagtctgaatatttatgcttgtaattttaaaaagggacatgctatatacgataaaaag  <  1:2154677‑M1/91‑91 (MQ=255)

ATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATTCAGACTCAAATATAGCCACACGCCTAAACTACGGAGGGATGTGGCTGTCTTTTTTGATTGTAATTACATATCAGATTTAAATCATTAATGTAAAGAGGCTAATTCATTAA  >  USA300TCH1516_ALE/2031869‑2032049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.