BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2626696 =	206 (1.080)	15 (0.090)	14/144	NT	7.7%	intergenic (‑296/+10)	sasG/sarT	Surface protein G/HTH‑type transcriptional regulator SarT
*	?	USA300TCH1516_ALE	2626715 =	172 (1.000)	15 (0.090)	14/144	NT	7.7%	coding (348/357 nt)	sarT	HTH‑type transcriptional regulator SarT

Only 100 of 292 total aligned reads displayed.

CATCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATT  >  USA300TCH1516_ALE/2626606‑2626786

cATCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCg                                                                                            >  2:3477771/1‑91 (MQ=255)

cATCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCg                                                                                            >  2:2922428/1‑91 (MQ=255)

cATCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCg                                                                                            >  1:1739239/1‑91 (MQ=255)

 gaccacatgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGa                                                                                           >  2:717705‑M1/90‑91 (MQ=255)

 acccacatgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGa                                                                                           >  2:2717168‑M1/90‑91 (MQ=255)

 aTCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGa                                                                                           >  2:3528199/1‑91 (MQ=255)

 aTCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGa                                                                                           <  1:1256095/91‑1 (MQ=255)

  tCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGaa                                                                                          >  1:1510633/1‑91 (MQ=255)

  tCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGaa                                                                                          <  1:712291/91‑1 (MQ=255)

  tCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGaa                                                                                          <  1:1675876/91‑1 (MQ=255)

  tCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGaa                                                                                          >  2:2459850/1‑91 (MQ=255)

  cccacatgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGaa                                                                                          <  1:2737978‑M1/3‑1 (MQ=255)

    cacatgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaactatattaaaaatcttttgagtgaaataaatattaatGAAAc                                                                                        >  1:3358376‑M1/87‑91 (MQ=255)

     acatgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGAAACa                                                                                       <  2:655367‑M1/6‑1 (MQ=255)

      catgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGAAACAt                                                                                      <  2:3519129‑M1/7‑1 (MQ=255)

      cTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACAt                                                                                      <  2:2154496/91‑1 (MQ=255)

       tCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATa                                                                                     >  2:1426402/1‑91 (MQ=255)

       tCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATAATAAAATCTCGAAACATa                                                                                     <  2:3144478/91‑1 (MQ=255)

       atgatagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGAAACATa                                                                                     >  2:1108374‑M1/84‑91 (MQ=255)

        cAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATAc                                                                                    <  2:240824/91‑1 (MQ=255)

        cAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATAc                                                                                    <  2:2746988/91‑1 (MQ=255)

        cAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATAc                                                                                    <  1:1541167/91‑1 (MQ=255)

         aaTAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATaaa                                                                                   <  2:3177265/91‑3 (MQ=255)

          aTAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATaaag                                                                                  <  1:1968542/91‑4 (MQ=255)

           tagtagaaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGAAACATACttt                                                                                 >  1:1572816‑M1/80‑91 (MQ=255)

           tAGCATTGAATTTCTAAAATAAAAAATACCTTAACGTATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACttt                                                                                 <  2:3827743/91‑1 (MQ=255)

           tAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATaaagt                                                                                 <  1:2308899/91‑5 (MQ=255)

           tAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACttt                                                                                 <  1:681499/91‑1 (MQ=255)

               aTTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGt                                                                             >  2:1797857/1‑91 (MQ=255)

                ttGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGtt                                                                            >  1:1862235/1‑91 (MQ=255)

                ttGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGtt                                                                            <  2:1695983/91‑1 (MQ=255)

                 aaatgtaatcattgttgtttctgtaaaacaacacaattatattataaatcttttgagtgaaataaatattaatGAAACATACTTTATGttt                                                                           >  1:3076633‑M1/74‑91 (MQ=255)

                 aaatgtaatcattgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatGAAACATACTTTATGttt                                                                           >  1:2644726‑M1/74‑91 (MQ=255)

                  gAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTc                                                                          >  1:2896830/1‑91 (MQ=255)

                  gAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTc                                                                          >  1:1398330/1‑91 (MQ=255)

                  gAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTc                                                                          >  2:3690051/1‑91 (MQ=255)

                     tttCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCAtt                                                                       >  1:2227135/1‑91 (MQ=255)

                     tttCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCAtt                                                                       <  1:902277/91‑1 (MQ=255)

                       tCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTaa                                                                     <  2:742907/91‑1 (MQ=255)

                       tCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTaa                                                                     >  2:3079005/1‑91 (MQ=255)

                           aaataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtatt                                                                 <  2:1980878/91‑1 (MQ=255)

                            aataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtattt                                                                >  2:2890415/1‑91 (MQ=255)

                            aataaaaAAGACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtattt                                                                <  1:3709092/91‑1 (MQ=255)

                             ataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtattta                                                               <  1:2137788/91‑1 (MQ=255)

                              taaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtatttat                                                              <  1:1780292/91‑1 (MQ=255)

                                aaaaaTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATatttattt                                                            >  1:1474945/1‑91 (MQ=255)

                                  aaaTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCa                                                          >  2:3039636/1‑91 (MQ=255)

                                  aaaTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCa                                                          >  2:942321/1‑91 (MQ=255)

                                    aTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACt                                                        >  2:2328045/1‑91 (MQ=255)

                                      aCCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCa                                                      <  1:1839332/91‑1 (MQ=255)

                                      aCCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCa                                                      <  1:2363052/91‑1 (MQ=255)

                                      aCCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCa                                                      >  1:2888443/1‑91 (MQ=255)

                                       ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                     >  2:1476599/1‑91 (MQ=255)

                                       ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                     <  1:3302443/91‑1 (MQ=255)

                                       ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                     >  1:323891/1‑91 (MQ=255)

                                       ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                     >  1:101410/1‑91 (MQ=255)

                                         ttAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaaaa                                                   >  2:466242/1‑91 (MQ=255)

                                          tAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAg                                                  >  2:2909435/1‑91 (MQ=255)

                                           aaCGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGa                                                 >  1:2019016/1‑91 (MQ=255)

                                           aaCGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGa                                                 <  2:1394223/91‑1 (MQ=255)

                                              gCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttt                                              <  1:544315/91‑1 (MQ=255)

                                               cATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAtttt                                             >  2:3341650/1‑91 (MQ=255)

                                                aTTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttttt                                            <  1:1110952/91‑1 (MQ=255)

                                                aTTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttttt                                            <  1:3640952/91‑1 (MQ=255)

                                                 tttAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTa                                           >  1:2438984/1‑91 (MQ=255)

                                                  ttAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTaa                                          >  2:2245871/1‑91 (MQ=255)

                                                   tAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAat                                         <  2:1509048/91‑1 (MQ=255)

                                                     aaaaaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAatat                                       >  2:386525/1‑91 (MQ=255)

                                                      aaaaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAAtata                                      <  1:267963/91‑1 (MQ=255)

                                                       aaaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATaa                                     <  2:1298443/91‑1 (MQ=255)

                                                        aaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAAt                                    <  2:2731839/91‑1 (MQ=255)

                                                           aCATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATtgt                                 <  2:872015/91‑1 (MQ=255)

                                                           aCATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATtgt                                 <  1:3530643/91‑1 (MQ=255)

                                                            cATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATtgtg                                <  1:2023394/91‑1 (MQ=255)

                                                             aTTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTgtgt                               >  1:1222239/1‑91 (MQ=255)

                                                             aTTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTgtgt                               <  1:3405845/91‑1 (MQ=255)

                                                             aTTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTgtgt                               <  1:608225/91‑1 (MQ=255)

                                                             aTTTAACTGCACCAAGATATTAAAATCTCCATACATGCTTTATGGTTCATTAAGATTGATTTCACTCAAAAGATTTTTAATATAATTgtgt                               <  1:3103557/91‑1 (MQ=255)

                                                              tttAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGtgtt                              >  1:296247/1‑91 (MQ=255)

                                                               ttAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGtgttg                             >  2:2540324/1‑91 (MQ=255)

                                                                   cTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGtttt                         >  1:2632563/1‑91 (MQ=255)

                                                                    tGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTa                        <  1:3839563/91‑1 (MQ=255)

                                                                        ccAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGa                    <  1:409835/91‑1 (MQ=255)

                                                                        ccAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGa                    <  2:3590224/91‑1 (MQ=255)

                                                                          aaGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaa                  >  1:718085/1‑91 (MQ=255)

                                                                          aaGATATTAAAATATCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaa                  >  1:3380601/1‑91 (MQ=255)

                                                                           aGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAaac                 >  2:2806485/1‑91 (MQ=255)

                                                                            gATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTTTGTTGTTTTACAGAaaca                >  2:824959/1‑91 (MQ=255)

                                                                                ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAacaacac            >  1:3107506/1‑90 (MQ=255)

                                                                                ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAAcaacaa            <  2:2363849/91‑1 (MQ=255)

                                                                                 aatattaatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAAt           <  2:1755068‑M1/82‑1 (MQ=255)

                                                                                  aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg          >  1:2067430/1‑91 (MQ=255)

                                                                                  aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg          <  1:3565246/91‑1 (MQ=255)

                                                                                  aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg          <  1:723386/91‑1 (MQ=255)

                                                                                  aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg          <  2:1427483/91‑1 (MQ=255)

                                                                                    aaTCTCGAGACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAt        <  2:1866069/91‑1 (MQ=255)

                                                                                      tctcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTa      >  1:822670/1‑91 (MQ=255)

                                                                                         cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt   >  1:2095603/1‑91 (MQ=255)

                                                                                          GAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt  >  1:349657‑M1/1‑91 (MQ=255)

                                                                                          GAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt  <  2:2347954‑M1/91‑1 (MQ=255)

CATCAACTCAATAGCATTGAATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATT  >  USA300TCH1516_ALE/2626606‑2626786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.