BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2626696 =	206 (1.080)	15 (0.090)	14/144	NT	7.7%	intergenic (‑296/+10)	sasG/sarT	Surface protein G/HTH‑type transcriptional regulator SarT
*	?	USA300TCH1516_ALE	2626715 =	172 (1.000)	15 (0.090)	14/144	NT	7.7%	coding (348/357 nt)	sarT	HTH‑type transcriptional regulator SarT

Only 100 of 274 total aligned reads displayed.

ATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCT  >  USA300TCH1516_ALE/2626626‑2626805

   tCTAAAATAAAATATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTaa                                                                                        <  2:2105911/91‑1 (MQ=255)

   tCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTaa                                                                                        <  2:742907/91‑1 (MQ=255)

   tCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTaa                                                                                        <  2:667707/91‑1 (MQ=255)

     taaaataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAata                                                                                      >  1:2789282/1‑91 (MQ=255)

      aaaataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAatat                                                                                     <  1:3352628/91‑1 (MQ=255)

      aaaataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAatat                                                                                     >  1:2102615/1‑91 (MQ=255)

       attgttgtttctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacatactttatgtttcATTAAtatt                                                                                    <  2:1755068‑M2/9‑1 (MQ=255)

        aataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtattt                                                                                   >  2:3747237/1‑91 (MQ=255)

        aataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtattt                                                                                   >  2:2898017/1‑91 (MQ=255)

        aataaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtattt                                                                                   >  2:2890415/1‑91 (MQ=255)

          taaaaAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAAtatttat                                                                                 <  1:1779615/91‑1 (MQ=255)

              aaaTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCa                                                                             >  2:942342/1‑91 (MQ=255)

              aaaTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCa                                                                             >  2:3040146/1‑91 (MQ=255)

                aTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACt                                                                           >  2:2328045/1‑91 (MQ=255)

                aTACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACt                                                                           >  2:2328142/1‑91 (MQ=255)

                 tACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTc                                                                          >  1:2346837/1‑91 (MQ=255)

                  aCCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCa                                                                         <  1:1839332/91‑1 (MQ=255)

                  aCCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCa                                                                         >  1:2888443/1‑91 (MQ=255)

                   ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                                        >  2:1476599/1‑91 (MQ=255)

                   ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                                        >  2:109041/1‑91 (MQ=255)

                   ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                                        <  1:3302443/91‑1 (MQ=255)

                   ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                                        >  2:2776372/1‑91 (MQ=255)

                   ccTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaa                                                                        >  1:101410/1‑91 (MQ=255)

                    cTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaaa                                                                       <  1:1703736/91‑1 (MQ=255)

                     ttAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaaaa                                                                      <  2:1935631/91‑1 (MQ=255)

                     ttAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCaaaa                                                                      >  2:466242/1‑91 (MQ=255)

                       aaCGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGa                                                                    >  1:2019016/1‑91 (MQ=255)

                       aaCGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGa                                                                    <  2:1394223/91‑1 (MQ=255)

                       aaCGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGa                                                                    >  1:2018958/1‑91 (MQ=255)

                         cGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAtt                                                                  <  2:2273573/91‑1 (MQ=255)

                          gCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttt                                                                 <  1:544315/91‑1 (MQ=255)

                           acacaattatattaaaaatcttttgagtgaaataaatattaatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGAtttt                                                                <  2:1109166‑M1/48‑1 (MQ=255)

                            aTTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttttt                                                               <  1:3493942/91‑1 (MQ=255)

                            aTTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttttt                                                               <  1:1110952/91‑1 (MQ=255)

                            aTTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGAttttt                                                               <  1:2267858/91‑1 (MQ=255)

                             tttAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTa                                                              >  1:2438984/1‑91 (MQ=255)

                                aaaaaaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAata                                                           >  2:2913046/1‑91 (MQ=255)

                                 aaaaaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAatat                                                          >  2:386525/1‑91 (MQ=255)

                                  aaaaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAAtata                                                         <  1:267963/91‑1 (MQ=255)

                                   atattaaaaatcttttgagtgaaataaatattaatGAAACATAAAGTATGTTTCATTAATATTTATTTAACTCAAAAGATTTTTAATATaa                                                        <  2:56296‑M1/56‑1 (MQ=255)

                                    aaTACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAAt                                                       <  2:2731839/91‑1 (MQ=255)

                                      tACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATtg                                                     >  1:3779185/1‑91 (MQ=255)

                                       aCATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATtgt                                                    <  2:872015/91‑1 (MQ=255)

                                        cATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATtgtg                                                   <  1:2023394/91‑1 (MQ=255)

                                         aTTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTgtgt                                                  <  1:608225/91‑1 (MQ=255)

                                         aTTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTgtgt                                                  <  1:3405845/91‑1 (MQ=255)

                                         aTTTAACTGCACCAAGATATTAAAATCTCCATACATGCTTTATGGTTCATTAAGATTGATTTCACTCAAAAGATTTTTAATATAATTgtgt                                                  <  1:3103557/91‑1 (MQ=255)

                                          tttAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGtgtt                                                 >  2:1793983/1‑91 (MQ=255)

                                               cTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGtttt                                            >  1:2632577/1‑91 (MQ=255)

                                                tGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTa                                           <  1:3839563/91‑1 (MQ=255)

                                                 gCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTAc                                          <  1:136365/91‑1 (MQ=255)

                                                  cACCAAGATATTTAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACa                                         >  1:1463185/1‑91 (MQ=255)

                                                   aCCAAGATATTAAAATCTCGAAACATACTATATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTCTTTTACAg                                        >  2:3373601/1‑91 (MQ=255)

                                                    ccAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGa                                       >  2:1533526/1‑91 (MQ=255)

                                                    ccAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGa                                       <  1:409835/91‑1 (MQ=255)

                                                      aaGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaa                                     >  1:718195/1‑91 (MQ=255)

                                                       aGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAaac                                    >  2:2806485/1‑91 (MQ=255)

                                                       aGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAaac                                    <  2:3484559/91‑1 (MQ=255)

                                                         atatTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAaacaa                                  >  2:3020261/1‑91 (MQ=255)

                                                          tatTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAaacaac                                 <  2:2445186/91‑1 (MQ=255)

                                                          ataaatattaatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAaacaac                                 <  1:1228379‑M1/79‑1 (MQ=255)

                                                           taaatattaatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAacaaca                                <  1:3680657‑M1/80‑1 (MQ=255)

                                                           taaatattaatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAacaaca                                <  1:3679959‑M1/80‑1 (MQ=255)

                                                            ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAAcaacaa                               <  2:3172272/91‑1 (MQ=255)

                                                            ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAAcaacaa                               <  2:2363507/91‑1 (MQ=255)

                                                              aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                             <  1:3565033/91‑1 (MQ=255)

                                                              aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                             <  2:1427483/91‑1 (MQ=255)

                                                              aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                             <  2:1427379/91‑1 (MQ=255)

                                                                aaTCTCGAGACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAt                           <  2:1866069/91‑1 (MQ=255)

                                                                 ttaatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                          <  1:2427955‑M1/86‑1 (MQ=255)

                                                                 aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                          <  1:1536984/91‑1 (MQ=255)

                                                                  tctcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTa                         <  2:2559141/91‑1 (MQ=255)

                                                                  tctcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTa                         <  1:844712/91‑1 (MQ=255)

                                                                   ctcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTAc                        <  1:3379677/91‑1 (MQ=255)

                                                                   aatGAAACATAAAGTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTAc                        <  2:247289‑M1/88‑1 (MQ=255)

                                                                    tcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACa                       <  2:763536/91‑1 (MQ=255)

                                                                    tcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACa                       >  1:2058755/1‑91 (MQ=255)

                                                                    tcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACa                       <  1:2898017/91‑1 (MQ=255)

                                                                     cGAAACATACTTTATGTTTCATTAATCTTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                      >  2:2210797/1‑91 (MQ=255)

                                                                     cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                      >  1:2198852/1‑91 (MQ=255)

                                                                      gaaacataaagtatgtttcATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                     >  1:2092482‑M2/20‑91 (MQ=255)

                                                                      GAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                     >  1:3528199‑M1/1‑91 (MQ=255)

                                                                      GAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                     <  1:1791545‑M1/91‑1 (MQ=255)

                                                                       aaacataaagtatgtttcATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAttt                    >  1:2644726‑M2/19‑91 (MQ=255)

                                                                       aaacataaagtatgtttcATTAATATTTATTTCACTCAAAAGATTTATAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAttt                    >  1:3076633‑M2/19‑91 (MQ=255)

                                                                       AAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAttt                    <  2:1251856‑M1/91‑1 (MQ=255)

                                                                        AACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                   <  1:357975‑M1/91‑1 (MQ=255)

                                                                        AACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                   <  2:632880‑M1/91‑1 (MQ=255)

                                                                          CATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTcta                 <  2:3620098‑M1/91‑1 (MQ=255)

                                                                            TACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATGTAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctact               <  1:3097520‑M1/91‑1 (MQ=255)

                                                                            TACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctact               <  1:2984783‑M1/91‑1 (MQ=255)

                                                                             aaagtatgtttcATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctacta              >  1:1572816‑M2/13‑91 (MQ=255)

                                                                             ACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATATctacta              <  2:311118‑M1/91‑1 (MQ=255)

                                                                              cTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTAt             <  1:413110/91‑1 (MQ=255)

                                                                              aagtatgtttcATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTAt             >  1:3237940‑M2/12‑91 (MQ=255)

                                                                               tttATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATc            >  2:3546774/1‑91 (MQ=255)

                                                                               tttATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATc            >  1:2160395/1‑91 (MQ=255)

                                                                               tttATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATc            >  2:174064/1‑91 (MQ=255)

                                                                                     tttcATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTgg      <  1:706063‑M2/87‑1 (MQ=255)

                                                                                         aTTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtct  >  2:2395263/1‑91 (MQ=255)

ATTTCTAAAATAAAAAATACCTTAACGCATTTAAAAAATACATTTAACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCT  >  USA300TCH1516_ALE/2626626‑2626805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.