New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2636356 =194 (1.020)9 (0.050) 7/138 NT 6.1% intergenic (‑409/+60) fnbA_2/gntT Fibronectin‑binding protein A/High‑affinity gluconate transporter
?USA300TCH1516_ALE 2636404 = 112 (0.680)intergenic (‑457/+12) fnbA_2/gntT Fibronectin‑binding protein A/High‑affinity gluconate transporter

Only 100 of 227 total aligned reads displayed.

CTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAG  >  USA300TCH1516_ALE/2636266‑2636446
                                                                                          |                                                                                          
ttaacatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagt                                                                                            >  1:100069‑M1/91‑91 (MQ=255)
ttaacatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagt                                                                                            >  2:1234536‑M1/91‑91 (MQ=255)
cTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAAt                                                                                            <  2:642125/91‑1 (MQ=255)
   gAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATaaa                                                                                         <  2:2867018/91‑1 (MQ=255)
    aaaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAAc                                                                                        <  2:2378786/91‑1 (MQ=255)
     aaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACg                                                                                       <  1:1353223/91‑1 (MQ=255)
     aaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACg                                                                                       <  2:918723/91‑1 (MQ=255)
     aaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACg                                                                                       <  1:1867171/91‑1 (MQ=255)
     aaCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGCATTTCAGACGATTTTCTGCATAAAAATAAACg                                                                                       <  2:3804118/91‑1 (MQ=255)
      aCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgt                                                                                      <  1:2177566/91‑1 (MQ=255)
         ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATACACGTGtt                                                                                   >  2:3454259/1‑91 (MQ=255)
         ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGtt                                                                                   <  2:3178842/91‑1 (MQ=255)
         ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGtt                                                                                   >  2:786642/1‑91 (MQ=255)
             tcatcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCaa                                                                               <  2:2189275/91‑1 (MQ=255)
              catcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAg                                                                              <  2:1528286/91‑1 (MQ=255)
                tctctctTATATACTCAATATGTTTTTTATATCGTTCGGATTCTTAGTATTTCAGACGATTTTCTGCATAAAAATTTACTTGTTTCAAGGc                                                                            <  2:2368915/88‑1 (MQ=255)
                tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGc                                                                            <  2:1847907/91‑1 (MQ=255)
                tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGc                                                                            <  1:2062298/91‑1 (MQ=255)
                tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGc                                                                            <  2:3743721/91‑1 (MQ=255)
                   ctctAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAat                                                                         <  1:2954467/91‑1 (MQ=255)
                      tAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatata                                                                      <  2:2087515/91‑1 (MQ=255)
                       aaaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  1:2543259/91‑1 (MQ=255)
                        aaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATAtt                                                                    >  1:1263797/1‑91 (MQ=255)
                        aaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATAtt                                                                    >  2:3638347/1‑91 (MQ=255)
                         aaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTg                                                                   >  1:3855959/1‑91 (MQ=255)
                           tACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCa                                                                 <  2:1964737/91‑1 (MQ=255)
                            aCCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCaa                                                                <  2:745602/91‑1 (MQ=255)
                             cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:1183119/1‑91 (MQ=255)
                               cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTa                                                             >  1:2428087/1‑91 (MQ=255)
                                aaTATACATTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTATGCATAAAAATAAACGTGCCTCAAGGCAATATCTCGCACttcc                                                            >  2:3605085/1‑89 (MQ=255)
                                 atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           >  2:3429003/1‑91 (MQ=255)
                                 atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           <  1:1123100/91‑1 (MQ=255)
                                 atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           >  2:2706614/1‑91 (MQ=255)
                                   ataCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTaaata                                                         <  2:1580512/91‑5 (MQ=255)
                                   ataCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTa                                                         <  2:916189/91‑1 (MQ=255)
                                   ataCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTa                                                         <  2:1579195/91‑1 (MQ=255)
                                    tcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTaa                                                        >  1:683370‑M1/55‑91 (MQ=255)
                                    taCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaa                                                        <  2:2935537/91‑1 (MQ=255)
                                     aCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaa                                                       >  2:2320179/1‑91 (MQ=255)
                                       tttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     <  2:3867778/91‑1 (MQ=255)
                                       ggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     >  2:3292785‑M1/52‑91 (MQ=255)
                                        ttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAac                                                    <  2:3139656/91‑1 (MQ=255)
                                         tttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAaca                                                   <  1:3193224/91‑1 (MQ=255)
                                         tttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAaca                                                   <  1:3027606/91‑1 (MQ=255)
                                         tttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAaca                                                   <  2:2666808/91‑1 (MQ=255)
                                           tataTCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACg                                                 >  2:1380538/1‑91 (MQ=255)
                                           tataTCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACg                                                 <  1:2957919/91‑1 (MQ=255)
                                             tatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGtt                                               <  1:2595002/91‑1 (MQ=255)
                                              atCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGttt                                              >  2:1599538/1‑91 (MQ=255)
                                              atCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGttt                                              >  1:2110721/1‑91 (MQ=255)
                                                ttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTAc                                            >  1:1496999‑M1/43‑91 (MQ=255)
                                                 gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                           <  2:3234884/91‑1 (MQ=255)
                                                 gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                           <  2:1429596/91‑1 (MQ=255)
                                                 gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                           <  1:764279/91‑1 (MQ=255)
                                                  ttCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACtt                                          <  2:1780790/91‑1 (MQ=255)
                                                   tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                         <  2:1063942/91‑1 (MQ=255)
                                                    cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                        <  1:3682465/91‑1 (MQ=255)
                                                      gATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAata                                      >  1:3418052/1‑91 (MQ=255)
                                                       tattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAatat                                     >  1:413930‑M1/36‑91 (MQ=255)
                                                       aTTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAatat                                     <  1:1582690/91‑1 (MQ=255)
                                                       aTTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAatat                                     <  1:2375509/91‑1 (MQ=255)
                                                        ttCTGAGTATTTCAGACGATTTTCTGCATAAAACTAAACGTGTTTCAAGGCAATATATTACAATTACCTAAAAACACGTTTACTTAATAtt                                    <  1:3444700/91‑1 (MQ=255)
                                                        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                    <  2:2218385/91‑1 (MQ=255)
                                                        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                    <  2:643033/91‑1 (MQ=255)
                                                          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                  >  2:2597143/1‑91 (MQ=255)
                                                          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                  >  1:861598/1‑91 (MQ=255)
                                                            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                >  1:282032/1‑91 (MQ=255)
                                                            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                <  1:2223808/91‑1 (MQ=255)
                                                               tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaa                             >  1:1020167/1‑91 (MQ=255)
                                                                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                            <  2:3000745/91‑1 (MQ=255)
                                                                  ttCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACa                          >  1:3121822/1‑91 (MQ=255)
                                                                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                        <  1:1696886/91‑1 (MQ=255)
                                                                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                        >  1:903185/1‑91 (MQ=255)
                                                                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                        <  1:747043/91‑1 (MQ=255)
                                                                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACGTAATATTTAGTTAAACaaa                        <  2:3396696/91‑1 (MQ=255)
                                                                     aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAAt                       >  1:2935103/1‑91 (MQ=255)
                                                                      gACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATCTTTAGTTAAACAAATa                      >  2:3700388/1‑91 (MQ=255)
                                                                       aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                     >  2:2362475/1‑91 (MQ=255)
                                                                       aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                     >  1:996535/1‑91 (MQ=255)
                                                                        cGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                    >  1:2739051/1‑91 (MQ=255)
                                                                           ttttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTa                 <  1:3517500/91‑1 (MQ=255)
                                                                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                >  2:960176/1‑91 (MQ=255)
                                                                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                <  1:2176366/91‑1 (MQ=255)
                                                                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                >  2:3129439/1‑91 (MQ=255)
                                                                             ttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAAt               <  2:2753317/91‑1 (MQ=255)
                                                                              tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              >  1:3456009/1‑91 (MQ=255)
                                                                              tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              >  1:2412939/1‑91 (MQ=255)
                                                                              tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              <  1:2761555/91‑1 (MQ=255)
                                                                               cTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa             >  1:2696689/1‑91 (MQ=255)
                                                                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  2:2031691/91‑1 (MQ=255)
                                                                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  2:1202921/91‑1 (MQ=255)
                                                                                  cATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAACCACGTTTACTTAATATTTAGTTAAACAAAGAAGCTAATGAATa          >  1:3879208/1‑91 (MQ=255)
                                                                                  cATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATa          <  1:2656155/91‑1 (MQ=255)
                                                                                   aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaa         <  1:724804/91‑1 (MQ=255)
                                                                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa       <  2:3663252/91‑1 (MQ=255)
                                                                                      aaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAAt      <  1:1437222/91‑1 (MQ=255)
                                                                                       aaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg     <  2:1619447/91‑1 (MQ=255)
                                                                                       aaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg     <  1:2966458/91‑1 (MQ=255)
                                                                                        aaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGa    <  2:148690/91‑1 (MQ=255)
                                                                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg  >  2:2571142‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
CTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAG  >  USA300TCH1516_ALE/2636266‑2636446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.