BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2636356 =	194 (1.020)	9 (0.050)	7/138	NT	6.1%	intergenic (‑409/+60)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter
*	?	USA300TCH1516_ALE	2636404 =	112 (0.680)	9 (0.050)	7/138	NT	6.1%	intergenic (‑457/+12)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter

Only 100 of 182 total aligned reads displayed.

CGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAG  >  USA300TCH1516_ALE/2636314‑2636494

ttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTAc                                                                                            >  1:1496999‑M1/43‑91 (MQ=255)

ttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTAc                                                                                            >  1:1497383‑M1/43‑91 (MQ=255)

 gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                                                                           <  2:1429596/91‑1 (MQ=255)

 gTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACt                                                                                           <  1:764279/91‑1 (MQ=255)

  ttCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACtt                                                                                          <  2:1780790/91‑1 (MQ=255)

   tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                                                                         >  2:1078989/1‑91 (MQ=255)

   tCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTa                                                                                         <  2:1063942/91‑1 (MQ=255)

    cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                                                                        <  1:3682465/91‑1 (MQ=255)

      gATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAata                                                                                      >  1:3418052/1‑91 (MQ=255)

       aTTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAatat                                                                                     <  1:1582690/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAACTAAACGTGTTTCAAGGCAATATATTACAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  1:3444700/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  1:3563791/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  2:2218385/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  2:642872/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    >  1:2935498/1‑91 (MQ=255)

          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                                                                  >  1:861598/1‑91 (MQ=255)

           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:2702076/1‑91 (MQ=255)

           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  2:3263521/1‑91 (MQ=255)

            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                                                                <  1:2223808/91‑1 (MQ=255)

             agaaTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCTATGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGtt                                                                               <  2:2593804/88‑1 (MQ=255)

               tATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaa                                                                             >  1:1020167/1‑91 (MQ=255)

                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            <  2:3000745/91‑1 (MQ=255)

                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        <  1:747043/91‑1 (MQ=255)

                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        >  2:3339819/1‑91 (MQ=255)

                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        >  2:75565/1‑91 (MQ=255)

                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACGTAATATTTAGTTAAACaaa                                                                        <  2:3396696/91‑1 (MQ=255)

                      gACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATCTTTAGTTAAACAAATa                                                                      >  2:3700388/1‑91 (MQ=255)

                      gACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATa                                                                      >  1:2912179/1‑91 (MQ=255)

                       aCGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATaa                                                                     >  2:2362410/1‑91 (MQ=255)

                        cGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                                                                    >  1:792980/1‑91 (MQ=255)

                        cGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAg                                                                    >  1:2739051/1‑91 (MQ=255)

                           ttttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTa                                                                 <  1:3517500/91‑1 (MQ=255)

                           ttttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTGACTTAATATTTAGTTAAACAAATAAGCTa                                                                 >  1:3118391/1‑91 (MQ=255)

                            tttCTGCGTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                                                                <  2:3449776/91‑1 (MQ=255)

                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                                                                >  2:3129439/1‑91 (MQ=255)

                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                                                                >  2:960402/1‑91 (MQ=255)

                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                                                                <  1:2176366/91‑1 (MQ=255)

                              tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg                                                              >  1:3456009/1‑91 (MQ=255)

                              tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg                                                              <  1:2761555/91‑1 (MQ=255)

                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            >  1:3868797/1‑91 (MQ=255)

                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            <  2:1202921/91‑1 (MQ=255)

                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            >  1:2208006/1‑91 (MQ=255)

                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            <  2:2031691/91‑1 (MQ=255)

                                  cATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATa                                                          <  2:1084862/91‑1 (MQ=255)

                                  cATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATa                                                          <  1:2656155/91‑1 (MQ=255)

                                  atattaagtaaacgtgtttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATa                                                          >  1:413930‑M2/57‑91 (MQ=255)

                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       <  2:3663252/91‑1 (MQ=255)

                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       <  1:398751/91‑1 (MQ=255)

                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       >  1:1170071/1‑91 (MQ=255)

                                      taagtaaacgtgtttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAAt                                                      >  1:689186‑M2/53‑91 (MQ=255)

                                       aaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg                                                     <  1:2966458/91‑1 (MQ=255)

                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg                                                  >  2:2571225‑M1/1‑91 (MQ=255)

                                           AAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAga                                                 <  1:1491511‑M1/91‑1 (MQ=255)

                                            AACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgat                                                <  2:25691‑M1/91‑1 (MQ=255)

                                            AACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgat                                                <  2:3200796‑M1/91‑1 (MQ=255)

                                              CGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                              <  1:3716129‑M1/91‑1 (MQ=255)

                                              CGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                              <  1:3351825‑M1/91‑1 (MQ=255)

                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            <  1:194197‑M1/91‑1 (MQ=255)

                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            <  1:2794384‑M1/91‑1 (MQ=255)

                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  2:2833985‑M1/1‑91 (MQ=255)

                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  2:1221695‑M1/1‑91 (MQ=255)

                                                  tttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAcc                                          >  1:2387526‑M2/41‑91 (MQ=255)

                                                  TTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGAGAcc                                          <  1:3125562‑M1/91‑1 (MQ=255)

                                                   TTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCt                                         >  2:1017156‑M1/1‑91 (MQ=255)

                                                     ttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGa                                       >  1:683370‑M2/38‑91 (MQ=255)

                                                      aaGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            <  1:967017/69‑1 (MQ=255)

                                                      aaGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGaa                                      >  1:2513646/1‑91 (MQ=255)

                                                        ggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAc                                    >  2:3034615‑M2/35‑91 (MQ=255)

                                                         gCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACg                                   <  2:1568949/91‑1 (MQ=255)

                                                           aaTATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGa                                 <  1:138365/91‑1 (MQ=255)

                                                            atatatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaa                                >  1:1884285/1‑91 (MQ=255)

                                                             tatatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaaa                               <  2:920191/91‑1 (MQ=255)

                                                              atatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaat                              <  1:1505428/91‑1 (MQ=255)

                                                              atatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaat                              <  2:2912179/91‑1 (MQ=255)

                                                               tatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaata                             >  2:3558067/1‑91 (MQ=255)

                                                                 ttGCAATTACCTAACAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAAGGTaataat                           >  2:3294786/1‑91 (MQ=255)

                                                                 ttGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataat                           >  1:211224/1‑91 (MQ=255)

                                                                 ttGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataat                           >  2:3780548/1‑91 (MQ=255)

                                                                  tGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATc                          <  1:2389807/91‑1 (MQ=255)

                                                                    cAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGt                        >  1:3820980/1‑91 (MQ=255)

                                                                      aTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGttt                      >  1:902898/1‑91 (MQ=255)

                                                                      aTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGttt                      <  1:3638347/91‑1 (MQ=255)

                                                                         aCCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                   >  1:1442417/1‑91 (MQ=255)

                                                                         aCCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                   <  1:1792359/91‑1 (MQ=255)

                                                                          ccTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaa                  >  2:1462602/1‑91 (MQ=255)

                                                                          ccTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaa                  <  2:2935103/91‑1 (MQ=255)

                                                                           cTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaat                 >  1:2583852/1‑91 (MQ=255)

                                                                            tAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaata                >  2:1212749/1‑91 (MQ=255)

                                                                            tAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaata                >  2:275162/1‑91 (MQ=255)

                                                                             aaaaaCACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaataa               >  1:2486700/1‑91 (MQ=255)

                                                                             aaaaaCACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaataa               >  1:2276687/1‑91 (MQ=255)

                                                                             aaaaaCACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaataa               >  1:839699/1‑91 (MQ=255)

                                                                             aaaaaCACGTTTACTTAATATTTAGTTAAACAAATAACCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaataa               >  1:3275272/1‑91 (MQ=255)

                                                                              aaaaCACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTaataat              >  1:2636583/1‑91 (MQ=255)

                                                                               aaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAGTGAAGATGATAACTGAAACGGAAATAATCGTTTCTAATAATg             >  1:1826466‑M2/12‑91 (MQ=255)

                                                                                        taCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTa    <  2:2032573‑M2/89‑1 (MQ=255)

                                                                                         aCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTaa   >  2:1234536‑M2/2‑91 (MQ=255)

                                                                                         aCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTaa   >  1:100069‑M2/2‑91 (MQ=255)

                                                                                          cTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAg  <  1:1771595/91‑1 (MQ=255)

                                                                                          cTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAg  >  1:2858760/1‑91 (MQ=255)

CGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAG  >  USA300TCH1516_ALE/2636314‑2636494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.