| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2716752 | 146 (0.770) | 9 (0.050) | 8/138 | NT | 5.6% | intergenic (+60/+90) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2716804 | 177 (1.080) | intergenic (+112/+38) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
Only 100 of 267 total aligned reads displayed.
TCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTT > USA300TCH1516_ALE/2716662‑2716842 | tCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC < 2:1754729‑M1/91‑1 (MQ=255) cGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACt > 1:3298363/1‑91 (MQ=255) gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg > 2:868649/1‑91 (MQ=255) caacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAt < 1:1330772/91‑1 (MQ=255) caacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAt > 2:2307786/1‑91 (MQ=255) acaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTg < 1:757034/91‑1 (MQ=255) aaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGaa > 2:3728488/1‑91 (MQ=255) aaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGaa < 2:1541035/91‑1 (MQ=255) aTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAg < 1:3325659/91‑1 (MQ=255) cGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGaca < 1:2842676/91‑1 (MQ=255) cGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGaca < 2:1178349/91‑1 (MQ=255) ggTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGacac > 2:57804/1‑91 (MQ=255) ggTTATACTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGacac < 1:1938005/91‑1 (MQ=255) gTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACt > 2:893167/1‑91 (MQ=255) tataTTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTaa < 2:299356/91‑1 (MQ=255) tCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATgtgt < 1:1752800/91‑1 (MQ=255) tCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATgtgt < 1:2526054/91‑1 (MQ=255) cAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTc < 1:2687684/91‑1 (MQ=255) aaaaTTACTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCg < 1:1940943/91‑1 (MQ=255) aaaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCg < 1:2619689/91‑1 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc < 2:1203827/91‑1 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc < 1:2382890/91‑1 (MQ=255) aaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCa < 1:3738847/91‑1 (MQ=255) aaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCa < 1:1189361/91‑1 (MQ=255) aTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCAc > 1:2298760/1‑91 (MQ=255) atatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATg > 2:260986/1‑91 (MQ=255) atTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGt < 2:2008669/91‑1 (MQ=255) atTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGt > 1:241531/1‑91 (MQ=255) cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAtt > 1:3198673/1‑91 (MQ=255) cGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTAc > 1:2710336/1‑91 (MQ=255) gAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACg > 2:3257705/1‑91 (MQ=255) gTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCtt < 1:2184511/91‑1 (MQ=255) aTTGCACTTAAGGTGCCAACTGACCTCATAAGCAAAGCCCATACtgagatgaggcgtaatgtgcaccgtggtgcgacacattagtgtcttc < 2:925138‑M1/91‑48 (MQ=255) aTTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCa > 2:3268354/1‑91 (MQ=255) aTTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCa > 2:1292262/1‑91 (MQ=255) ttGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAt > 2:3786647/1‑91 (MQ=255) tGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtc < 1:2960022/91‑1 (MQ=255) tGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtc > 1:50131/1‑91 (MQ=255) caccTTAA‑GTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtctc > 1:920629/4‑91 (MQ=255) cctTAAG‑TGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTg < 2:1012251‑M2/90‑2 (MQ=255) ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgt > 1:1113424‑M2/1‑89 (MQ=255) ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgt > 1:2020390‑M2/1‑89 (MQ=255) ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgt < 1:2020894‑M2/91‑3 (MQ=255) tAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgta > 1:893167‑M2/1‑88 (MQ=255) tAAGGTGCCAACTGACCGCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagta < 1:1142008‑M1/91‑56 (MQ=255) aaGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtat < 1:890261‑M1/91‑57 (MQ=255) ggTGCCAACTGGCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg > 1:59281‑M2/1‑85 (MQ=255) gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg > 2:431490‑M2/1‑84 (MQ=255) gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg < 1:2099579‑M2/91‑8 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc < 1:3619684‑M2/91‑9 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc > 1:2109591‑M2/1‑83 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc < 1:3468562‑M2/91‑9 (MQ=255) gCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggct < 1:688908‑M2/91‑10 (MQ=255) gACCTCATAAACATAGCCCATACTGATTGAAGACACTAATGTGGCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 1:3874837/91‑1 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 1:2813676/91‑1 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 2:2154962/91‑1 (MQ=255) ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattta < 1:3373962/91‑1 (MQ=255) ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTAATCTCTGTATGGGCTTtttattta > 2:787738/1‑91 (MQ=255) cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTttatttat > 1:1497876/1‑91 (MQ=255) gaaTAAACAAGGCCCATACTGATTGAAGACACTAGTGTGTCGCACCGTGGGGCACATTACGCTTCAACTCTGTATGGGCTTTTtatttatt < 2:3827670/89‑1 (MQ=255) cATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTc > 1:3753420/1‑91 (MQ=255) aTAAACATAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt < 2:3445742/91‑1 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt > 2:2678087/1‑91 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt > 2:3815378/1‑91 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt > 2:3846952/1‑91 (MQ=255) aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTg > 2:983253/1‑91 (MQ=255) aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTg > 2:2115673/1‑91 (MQ=255) aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACACTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTg > 2:2069027/1‑91 (MQ=255) cAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTga < 2:241531/91‑1 (MQ=255) aaaGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttg < 1:402609‑M1/91‑81 (MQ=255) aaaGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag > 1:161736/1‑91 (MQ=255) aaaGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag > 1:1669066/1‑91 (MQ=255) aaGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttgg > 1:2519286‑M1/1‑10 (MQ=255) aGCCCATACagagatgaggcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggc < 2:339284‑M1/91‑83 (MQ=255) aGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggc < 1:688367‑M1/91‑83 (MQ=255) aGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggc < 2:339292‑M1/91‑83 (MQ=255) aGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGaa > 1:1059965/1‑91 (MQ=255) gCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggca < 1:1125780‑M1/91‑84 (MQ=255) gCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggca < 1:1431987‑M1/91‑84 (MQ=255) gCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggca > 2:3632938‑M1/1‑8 (MQ=255) gCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggca < 1:3100964‑M1/91‑84 (MQ=255) gCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatcagctttgtttatgaggtcagttggca > 2:3364021‑M1/1‑8 (MQ=255) gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctttgtttatgaggtcagttggca < 1:3032700‑M2/91‑32 (MQ=255) gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt < 1:57804/91‑1 (MQ=255) gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt > 2:1241531/1‑91 (MQ=255) gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt > 2:2816231/1‑91 (MQ=255) cccATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatggcctttgtttatgaggtcagttggcac > 1:3601592‑M1/1‑7 (MQ=255) cccATACagagatgaagcgtaatgtgcaccatggtgcgacacatta > 1:1143044‑M1/1‑7 (MQ=255) ccATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggcacc > 2:711189‑M1/1‑6 (MQ=255) ccATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt > 2:7532/1‑91 (MQ=255) cATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggcacct < 2:419429‑M1/91‑87 (MQ=255) cATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggcacct < 1:1737740‑M1/91‑87 (MQ=255) cATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTc > 2:2854836/1‑91 (MQ=255) cATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTc > 1:2264458/1‑91 (MQ=255) aTACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCa < 2:3619684/91‑1 (MQ=255) aTACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCa > 1:3402436/1‑91 (MQ=255) aCTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt > 2:434654/1‑91 (MQ=255) aCTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt > 2:3626862/1‑91 (MQ=255) cagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttggcacttaagg < 2:1011892‑M1/91‑91 (MQ=255) cTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctttgtttatgaggtcagttggcaccttaag < 1:2586008‑M2/91‑39 (MQ=255) | TCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTT > USA300TCH1516_ALE/2716662‑2716842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |