BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2716752	146 (0.770)	9 (0.050)	8/138	NT	5.6%	intergenic (+60/+90)	USA300HOU_RS13965/USA300HOU_RS13970	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2716804	177 (1.080)	9 (0.050)	8/138	NT	5.6%	intergenic (+112/+38)	USA300HOU_RS13965/USA300HOU_RS13970	hypothetical protein/hypothetical protein

Only 100 of 244 total aligned reads displayed.

ACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTC  >  USA300TCH1516_ALE/2716714‑2716894

cctTAAG‑TGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTg                                                                                           <  2:1011892‑M2/90‑2 (MQ=255)

 cTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTg                                                                                           >  1:28440‑M2/1‑90 (MQ=255)

  ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgt                                                                                          >  1:1113424‑M2/1‑89 (MQ=255)

   tAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgta                                                                                         >  1:893167‑M2/1‑88 (MQ=255)

      ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg                                                                                      >  2:711189‑M2/1‑85 (MQ=255)

       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg                                                                                     <  1:2099579‑M2/91‑8 (MQ=255)

       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg                                                                                     >  1:2617080‑M2/1‑84 (MQ=255)

       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg                                                                                     <  1:167122‑M2/91‑8 (MQ=255)

       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg                                                                                     >  2:431490‑M2/1‑84 (MQ=255)

        tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc                                                                                    >  2:3632719‑M2/1‑83 (MQ=255)

        tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc                                                                                    <  1:3619684‑M2/91‑9 (MQ=255)

        tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc                                                                                    <  1:1125681‑M2/91‑9 (MQ=255)

        tGCCAACTGACCTCAGAAACAAAGCGTATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc                                                                                    >  2:3363956‑M2/1‑83 (MQ=255)

         gCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCCTCATCTCTgtatgggct                                                                                   <  2:339284‑M2/91‑10 (MQ=255)

          ccAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctt                                                                                  >  1:2519286‑M2/1‑81 (MQ=255)

           cAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggcttt                                                                                 <  1:402609‑M2/91‑12 (MQ=255)

             aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCttttt                                                                               >  1:780765/1‑91 (MQ=255)

              cTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta                                                                              <  2:3638337/91‑1 (MQ=255)

              cTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta                                                                              <  1:676267/91‑1 (MQ=255)

                  ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattta                                                                          <  1:3373962/91‑1 (MQ=255)

                  ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattta                                                                          <  1:2805824/91‑1 (MQ=255)

                  ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTAATCTCTGTATGGGCTTtttattta                                                                          >  2:787738/1‑91 (MQ=255)

                    tCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCATCATCTCTGTATGGGCTTTTtatttatt                                                                        >  2:2069256/1‑91 (MQ=255)

                      aTAAACATAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt                                                                      <  2:3445742/91‑1 (MQ=255)

                      aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt                                                                      >  2:3846952/1‑91 (MQ=255)

                      aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt                                                                      >  2:2678087/1‑91 (MQ=255)

                      aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt                                                                      >  2:3815322/1‑91 (MQ=255)

                          aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTg                                                                  >  2:983253/1‑91 (MQ=255)

                           cAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTga                                                                 <  1:1263115/91‑1 (MQ=255)

                            aaaGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag                                                                >  1:1669053/1‑91 (MQ=255)

                             aaGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCATCATCTCTGTATGGGCTTTTTATTTATTCTTTTgaga                                                               <  1:3285185/91‑1 (MQ=255)

                              aGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGaa                                                              >  1:1059965/1‑91 (MQ=255)

                               gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt                                                             >  2:1241531/1‑91 (MQ=255)

                               gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt                                                             >  2:2816230/1‑91 (MQ=255)

                               gCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt                                                             <  1:57804/91‑1 (MQ=255)

                                 ccATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt                                                           >  2:7532/1‑91 (MQ=255)

                                   aTACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCa                                                         >  1:3402436/1‑91 (MQ=255)

                                    tACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAt                                                        <  2:2319333/91‑1 (MQ=255)

                                     aCTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt                                                       >  2:434655/1‑91 (MQ=255)

                                     aCTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt                                                       >  2:3626576/1‑91 (MQ=255)

                                      cTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAttt                                                      <  2:848899/91‑1 (MQ=255)

                                       tGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtttt                                                     <  2:2698625/91‑1 (MQ=255)

                                       tGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtttt                                                     >  2:1034551/1‑91 (MQ=255)

                                        gATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTa                                                    >  2:2636870/1‑91 (MQ=255)

                                        gATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTa                                                    <  1:3493629/91‑1 (MQ=255)

                                           tGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCa                                                 <  1:1478573/91‑1 (MQ=255)

                                           tGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCa                                                 >  2:2053039/1‑91 (MQ=255)

                                           tGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCa                                                 <  1:984424/91‑1 (MQ=255)

                                           tGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTATTATTTATTCTTTTGAGAATTTCATTTTAGCa                                                 >  1:3300859/1‑91 (MQ=255)

                                            gAAGACACTAATGTGTCGCACCACGGTGCACATTACGCCTCATCTCAgtatgggctttgcttatgaggtcagttggcaccttaagtgcaat                                                <  2:925138‑M2/91‑45 (MQ=255)

                                              aGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGAc                                              <  1:290282/91‑1 (MQ=255)

                                              aGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGAc                                              <  2:2287463/91‑1 (MQ=255)

                                                  acTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaa                                          >  1:1861544/1‑91 (MQ=255)

                                                  acTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaa                                          <  2:2096669/91‑1 (MQ=255)

                                                   cTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaa                                         >  1:3860222/1‑91 (MQ=255)

                                                    tAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg                                                                                     >  1:1143044‑M2/1‑39 (MQ=255)

                                                    tAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa                                        <  1:384402/91‑1 (MQ=255)

                                                    attagtgtCGCACCATGGTGCACATTACGCTTCATATCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATCTTAGCAGACCaaaaa                                        >  1:758390/5‑91 (MQ=255)

                                                     aaTGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaaa                                       >  2:1208248/1‑91 (MQ=255)

                                                      aTGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                      >  2:2864615/1‑91 (MQ=255)

                                                       tgtgTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAtt                                     <  2:40306/91‑1 (MQ=255)

                                                        gtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                                    <  2:1749788/91‑1 (MQ=255)

                                                        gtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                                    >  1:1190495/1‑91 (MQ=255)

                                                           tCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa                                 >  1:500580/1‑91 (MQ=255)

                                                           tCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa                                 >  2:215102/1‑91 (MQ=255)

                                                             gCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATg                               >  1:2230370/1‑91 (MQ=255)

                                                              cACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATgg                              >  2:3553171/1‑91 (MQ=255)

                                                               aCCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt                             >  2:1492694/1‑91 (MQ=255)

                                                               aCCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt                             >  1:645646/1‑91 (MQ=255)

                                                               aCCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt                             <  2:2018429/91‑1 (MQ=255)

                                                                ccgtGGTGCACGTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTTGGTATTTCATTCTAGCAGACCTAAAAATTAAAATGctg                            <  2:1570608/88‑1 (MQ=255)

                                                                ccATGGTGCACATTACGCTTCATCTCTGTATGCGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa                                        >  2:3812458/1‑79 (MQ=255)

                                                                  aTGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTc                          <  1:3786647/91‑1 (MQ=255)

                                                                   tGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTcc                         >  1:2712197/1‑91 (MQ=255)

                                                                    ggTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                        >  1:1843395/1‑91 (MQ=255)

                                                                    ggTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                        >  1:2155350/1‑91 (MQ=255)

                                                                    ggTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                        >  1:3459182/1‑91 (MQ=255)

                                                                     gTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCAt                       <  2:1118609/91‑1 (MQ=255)

                                                                       gCACATTGCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGATGTCCATCa                     <  1:1946356/91‑1 (MQ=255)

                                                                       gCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCa                     >  2:105041/1‑91 (MQ=255)

                                                                       gCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCa                     >  2:620360/1‑91 (MQ=255)

                                                                        cacaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGa                                               >  2:434600/1‑64 (MQ=255)

                                                                        cacaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCaa                    >  1:3010498/1‑91 (MQ=255)

                                                                        cacaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCaa                    <  1:230758/91‑1 (MQ=255)

                                                                         acaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAg                   <  2:157632/91‑1 (MQ=255)

                                                                          caTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGa                  >  2:3109612/1‑91 (MQ=255)

                                                                            ttACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATc                <  1:3065075/91‑1 (MQ=255)

                                                                            ttACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATc                <  1:3065160/91‑1 (MQ=255)

                                                                              aCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAACTTAAAATGGTGTCCATCAAGATCtt              >  1:2104010/1‑91 (MQ=255)

                                                                              aCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt              >  1:675060/1‑91 (MQ=255)

                                                                                gCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTg            <  1:1551060/91‑1 (MQ=255)

                                                                                 cTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGa           <  1:2014605/91‑1 (MQ=255)

                                                                                 cTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGa           >  2:2828690/1‑91 (MQ=255)

                                                                                 cTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGa           >  2:1161845/1‑91 (MQ=255)

                                                                                  ttCATCTCTGTATGGGCTTTTTATTTATTCTATTGAGAATTTCATTTTAGCAGACCAAAAAATTAAACTGGTGTCCATCGAGATCTTTGaa          >  2:2961345/1‑91 (MQ=255)

                                                                                  ttCATCTCTGTATGGGCTTTTTATTTATTCGTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGaa          <  2:2196901/91‑1 (MQ=255)

                                                                                     aTCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACAt       <  2:603546/91‑1 (MQ=255)

                                                                                        tctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGATCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGc    <  2:173942/91‑1 (MQ=255)

                                                                                          tGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTc  >  2:1643545/1‑91 (MQ=255)

                                                                                          tGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTc  >  2:1017414/1‑91 (MQ=255)

ACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTC  >  USA300TCH1516_ALE/2716714‑2716894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.