BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	11093 =	571 (1.030)	64 (0.130)	28/146	NT	11.5%	intergenic (+98/‑166)	blaI/USA300HOU_pUSA300HOUMR0014	beta‑lactamase regulator BlaI/recombinase
*	?	CP000731	11129 =	465 (0.920)	64 (0.130)	28/146	NT	11.5%	intergenic (+134/‑130)	blaI/USA300HOU_pUSA300HOUMR0014	beta‑lactamase regulator BlaI/recombinase

Only 100 of 733 total aligned reads displayed.

GACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCAA  >  CP000731/11039‑11219

 aCTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTg                                                                                           <  2:326373/91‑1 (MQ=255)

      tttgaacacataattctatgtaatacttacttatttagacaaaaaacaagagtgtccagaaaataaccattttctgtacactctTGttttt                                                                                      <  1:651645‑M2/7‑1 (MQ=255)

       attaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGtttttt                                                                                     >  2:1321971/1‑91 (MQ=255)

       attaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGtttttt                                                                                     >  1:2012358/1‑91 (MQ=255)

       attaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGtttttt                                                                                     >  2:872535/1‑91 (MQ=255)

        ttaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTg                                                                                    <  1:1612101/91‑1 (MQ=255)

         taAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGt                                                                                   >  1:3838059/1‑91 (MQ=255)

         taAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGt                                                                                   <  1:800046/91‑1 (MQ=255)

         taAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGt                                                                                   <  2:2282778/91‑1 (MQ=255)

          aaaTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTc                                                                                  >  2:107352/1‑91 (MQ=255)

           aaTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCt                                                                                 >  1:1693868/1‑91 (MQ=255)

            aTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTa                                                                                <  2:2016861/91‑1 (MQ=255)

            aTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTa                                                                                <  2:3445681/91‑1 (MQ=255)

            aTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTa                                                                                >  1:862422/1‑91 (MQ=255)

             ttAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTaa                                                                               >  1:2731779/1‑91 (MQ=255)

                gTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAta                                                                            >  2:255808/1‑91 (MQ=255)

                 ttttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaa                                                                           >  1:1218576/1‑91 (MQ=255)

                  tttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaag                                                                          >  1:3443216/1‑91 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTAGACTCTTGTTTTTTGTCTAAAtaagta                                                                        >  2:3354737/1‑91 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagta                                                                        >  2:1418881/1‑91 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagta                                                                        <  2:3485874/91‑1 (MQ=255)

                     gTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagtaa                                                                       >  1:263806/1‑91 (MQ=255)

                     gTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagtaa                                                                       >  1:3778928/1‑91 (MQ=255)

                     gTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagtaa                                                                       >  2:533710/1‑91 (MQ=255)

                         aTGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAt                                                                   <  1:2472133/91‑1 (MQ=255)

                         aTGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAt                                                                   <  1:3502738/91‑1 (MQ=255)

                          tGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAtt                                                                  >  1:3146963/1‑91 (MQ=255)

                            aCATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTAc                                                                >  1:2511210/1‑91 (MQ=255)

                            aCATTTAAAATACATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTAc                                                                >  1:2992093/1‑91 (MQ=255)

                             cATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACa                                                               <  2:76688/91‑1 (MQ=255)

                             cATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACa                                                               <  2:643224/91‑1 (MQ=255)

                             cATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACa                                                               <  1:321226/91‑1 (MQ=255)

                              aTTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACAt                                                              <  1:2089565/91‑1 (MQ=255)

                               tttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATa                                                             <  1:1013017/91‑1 (MQ=255)

                                 tAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGa                                                           >  2:3728837/1‑91 (MQ=255)

                                 tAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGa                                                           <  1:3353712/91‑1 (MQ=255)

                                  aaaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACCTAGaa                                                          >  2:2597129/1‑91 (MQ=255)

                                   aaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAt                                                         >  2:278756/1‑91 (MQ=255)

                                    aaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAtt                                                        <  2:213096/91‑1 (MQ=255)

                                     atatatTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTa                                                       >  1:1560422/1‑91 (MQ=255)

                                     atatatTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGCATTACATAGAAttc                                                       >  1:1402726/1‑90 (MQ=255)

                                      tatatTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAt                                                      <  1:3660363/91‑1 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    >  1:3298874/1‑91 (MQ=255)

                                         attattAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgtg                                                   <  2:1047804/91‑1 (MQ=255)

                                          ttattaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTCAGTATTACATAGAATTCTgtgt                                                  >  2:166671/1‑91 (MQ=255)

                                           tattaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGtt                                                 <  1:448718/91‑1 (MQ=255)

                                            attaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTc                                                <  1:1494207/91‑1 (MQ=255)

                                            attaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTc                                                <  1:2801832/91‑1 (MQ=255)

                                             ttaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCa                                               <  2:3103547/91‑1 (MQ=255)

                                             ttaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCa                                               >  2:627286/1‑91 (MQ=255)

                                                   acaAGAGTGTACAGAAAATGGTTATTTTCTGGACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAcc                                         <  1:2896095‑M1/88‑1 (MQ=255)

                                                   aTGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAcc                                         >  2:403302/1‑91 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        >  1:1903596/1‑91 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAcac                                        <  2:2414167/91‑3 (MQ=255)

                                                     gagaGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCca                                       >  2:2471468/1‑91 (MQ=255)

                                                     aAGAGTGTACAGAAAATGGTTATTTTCTGGACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCca                                       <  1:1114499‑M1/90‑1 (MQ=255)

                                                      agagTGTCCAGAAAATAACCATTTTATGTACACTATTGTTTTTTGTTTAAATAAGTAAGTATTACAAAGAACTATGTGTACAAAAACCcaa                                      >  2:1222233/1‑91 (MQ=255)

                                                      AGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaa                                      <  1:2579856‑M1/91‑1 (MQ=255)

                                                      AGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaa                                      >  2:2081436‑M1/1‑91 (MQ=255)

                                                       GAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaac                                     >  1:2351923‑M1/1‑91 (MQ=255)

                                                        AGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaaca                                    >  2:1959745‑M1/1‑91 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   <  2:175802‑M1/91‑1 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   <  2:468324‑M1/91‑1 (MQ=255)

                                                           GTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaa                                 <  2:1577335‑M1/91‑1 (MQ=255)

                                                            tacagaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTTCATAGAATTATGTGTTCAAAAACCCAACaaaaa                                >  2:2397863‑M2/31‑91 (MQ=255)

                                                               aGAAAATAGCCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGATTTATGTGTTCAAAAACCCAACAAAAAATc                             <  2:3377496/91‑1 (MQ=255)

                                                                gaaaatggttattttctggacactctTGTTTTTTTTCTAAATAATTAAGTATTACATAGAATTATGTGTTCATAAATGCAACAAAACATCt                            >  2:3540070‑M2/27‑91 (MQ=255)

                                                                gaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            >  2:3086801‑M2/27‑91 (MQ=255)

                                                                gaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            >  1:2196321‑M2/27‑91 (MQ=255)

                                                                gAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            >  2:3191577/1‑91 (MQ=255)

                                                                gAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            >  2:1724586/1‑91 (MQ=255)

                                                                 aaaaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTa                           >  1:1961388/1‑91 (MQ=255)

                                                                 aaaaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTa                           >  1:1316353/1‑91 (MQ=255)

                                                                   aatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  1:1377821‑M2/24‑91 (MQ=255)

                                                                   aatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  2:379508‑M2/24‑91 (MQ=255)

                                                                   aaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  1:3099495/1‑91 (MQ=255)

                                                                   aaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         <  2:3644253/91‑1 (MQ=255)

                                                                   aaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         <  1:541432/91‑1 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  2:1003733/1‑91 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  2:2631440/1‑91 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  1:397168/1‑91 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  1:2947676/1‑91 (MQ=255)

                                                                           ttttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaaa                 <  2:2727232/91‑1 (MQ=255)

                                                                           ttttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaaa                 <  1:74670/91‑1 (MQ=255)

                                                                           ttttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaaa                 <  2:3018278/91‑1 (MQ=255)

                                                                           ttttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAAAAAAAAAAAAATCTATGTTCACaaa                 <  2:149942/91‑1 (MQ=255)

                                                                             ttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAg               <  2:2239639/91‑1 (MQ=255)

                                                                              tCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGa              >  1:909243/1‑91 (MQ=255)

                                                                               cTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGAc             >  1:1720011/1‑91 (MQ=255)

                                                                                 gTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCt           >  1:2248713/1‑91 (MQ=255)

                                                                                 gTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCt           <  2:1895127/91‑1 (MQ=255)

                                                                                 gTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCt           >  2:1846008/1‑91 (MQ=255)

                                                                                 gTACACTCTTCTTTTATGTCTAAATAAGTAAGAATTACATAGGATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCATAAAAGACCt           <  1:1788469/91‑1 (MQ=255)

                                                                                  tACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTc          <  2:93111/91‑1 (MQ=255)

                                                                                    cactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGt        <  2:725398‑M2/85‑1 (MQ=255)

                                                                                    cactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGt        <  2:2856200‑M2/85‑1 (MQ=255)

                                                                                       tctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAAt     <  2:2927664‑M2/88‑1 (MQ=255)

                                                                                       tctTGCTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAAt     <  2:3569875‑M2/88‑1 (MQ=255)

                                                                                         tTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCa   <  2:218216‑M2/90‑1 (MQ=255)

                                                                                         tTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCa   <  1:1056812‑M2/90‑1 (MQ=255)

GACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCAA  >  CP000731/11039‑11219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.