BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 500	9402 (0.790)	465 (0.040)	32/148	NT	5.1%	pseudogene (221/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	= 511	8702 (0.790)	465 (0.040)	32/148	NT	5.1%	pseudogene (232/709 nt)	USA300HOU_RS14890	replication protein

Only 100 of 13268 total aligned reads displayed.

AAAGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAAT  >  NC_012417/421‑601

aaaGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAGTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATATTAATg                                                                                            <  1:3162788/91‑1 (MQ=255)

aaaGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATg                                                                                            <  1:1665396/91‑1 (MQ=255)

aaaGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATg                                                                                            >  1:1872701/1‑91 (MQ=255)

 aaGCATTTGATAGGTTGAGTAGATATAAAAAGGTTATACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGa                                                                                           >  2:3507025‑M2/1‑90 (MQ=255)

  aGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGac                                                                                          <  2:1631111‑M2/91‑3 (MQ=255)

  aGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGac                                                                                          >  1:1391903‑M2/1‑89 (MQ=255)

     tataattatctttttttctaaaatatgcattttcaacacataacaaaacatgcatgtgctgattataacTACCGTTAATAAAAATGACGGt                                                                                       >  1:1937972‑M1/70‑91 (MQ=255)

     aTTTGCTAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       >  2:3584409‑M2/1‑86 (MQ=255)

     aTTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       >  2:431696‑M2/1‑86 (MQ=255)

      tttGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCGACAGAAGTTACCGTTAATAAAAATGacggta                                                                                      <  1:1131473‑M2/91‑7 (MQ=255)

       ttGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAg                                                                                     <  1:3371199/91‑1 (MQ=255)

        tGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGt                                                                                    >  1:727156/1‑91 (MQ=255)

        tGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGt                                                                                    >  2:2630559/1‑91 (MQ=255)

        tGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGt                                                                                    >  2:1558063/1‑91 (MQ=255)

        tGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGt                                                                                    >  2:335434/1‑91 (MQ=255)

         gATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGtt                                                                                   <  1:1001451/91‑1 (MQ=255)

         gATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGtt                                                                                   <  2:1070716/91‑1 (MQ=255)

           tAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTtat                                                                                 <  2:190372/91‑1 (MQ=255)

            aGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       >  1:486857‑M2/1‑79 (MQ=255)

              gTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAAT                                                                              >  1:3231787‑M1/1‑91 (MQ=255)

               ttGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATC                                                                             >  1:996941‑M1/1‑91 (MQ=255)

                 gAGTACATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAg                                                                           <  2:3138209/91‑1 (MQ=255)

                  aGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGc                                                                          >  2:3287633/1‑91 (MQ=255)

                   gTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGca                                                                         >  2:3214142/1‑91 (MQ=255)

                    tAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGcac                                                                        <  2:714031/91‑1 (MQ=255)

                     atatatAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGcaca                                                                       >  2:2487281/3‑91 (MQ=255)

                       atatAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatg                                                                     <  2:3661408/91‑1 (MQ=255)

                        tataAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgc                                                                    >  1:1533775/1‑91 (MQ=255)

                         ataAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgca                                                                   <  1:1256721/91‑1 (MQ=255)

                          taAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgcat                                                                  <  1:66633/91‑1 (MQ=255)

                          taAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgcat                                                                  >  1:1326843/1‑91 (MQ=255)

                           aaaaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgcatg                                                                 <  1:330603/91‑1 (MQ=255)

                           aaaaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgcatg                                                                 >  1:1468211/1‑91 (MQ=255)

                             aaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGtt                                                               >  1:1068440/1‑91 (MQ=255)

                              aaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGttt                                                              >  1:787724/1‑91 (MQ=255)

                               aGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACGTGCATGtttt                                                             <  2:500304/91‑1 (MQ=255)

                                ggTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTg                                                            <  2:3060423/91‑1 (MQ=255)

                                 gTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGt                                                           >  2:2998621/1‑91 (MQ=255)

                                  tcaaaCAAAATCGTGTTGGATTTAGGCGGTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGtt                                                          <  2:2777295/89‑1 (MQ=255)

                                     aaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtg                                                       >  1:2811269/1‑91 (MQ=255)

                                      aCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtgt                                                      >  1:357621/1‑91 (MQ=255)

                                       cAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtgtg                                                     <  2:149220/91‑1 (MQ=255)

                                         aaaTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTt                                                   >  1:3514116‑M2/1‑90 (MQ=255)

                                          aaTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTtg                                                  >  1:251195‑M2/1‑89 (MQ=255)

                                          aaTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTtg                                                  <  1:1809288‑M2/91‑3 (MQ=255)

                                           aTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAACGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTtga                                                 <  1:3080483‑M2/91‑4 (MQ=255)

                                              ttgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGaaaa                                              >  2:205864/1‑91 (MQ=255)

                                              ttgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGaaaa                                              >  1:932320/1‑91 (MQ=255)

                                               tgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAAt                                             >  1:2294202/1‑91 (MQ=255)

                                               tgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAAt                                             <  1:2744021/91‑1 (MQ=255)

                                                gttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATg                                            <  1:415013/91‑1 (MQ=255)

                                                 ttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGc                                           >  2:2699416/1‑91 (MQ=255)

                                                 ttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGc                                           >  2:2328731/1‑91 (MQ=255)

                                                 ttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGc                                           >  2:2128343/1‑91 (MQ=255)

                                                 ttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGc                                           >  1:3009626/1‑91 (MQ=255)

                                                 ttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGc                                           <  2:1208041/91‑1 (MQ=255)

                                                  tgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCa                                          <  2:372365/91‑1 (MQ=255)

                                                  tgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCa                                          <  2:1977675/91‑1 (MQ=255)

                                                   ggATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCat                                         <  2:78822/91‑1 (MQ=255)

                                                   ggATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCat                                         <  1:3443843/91‑1 (MQ=255)

                                                       ttATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATAttt                                     <  1:2671458/91‑1 (MQ=255)

                                                        tATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATAtttt                                    <  1:370882/91‑1 (MQ=255)

                                                        tATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATAttta                                    <  2:2197535/91‑2 (MQ=255)

                                                           gCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGa                                 >  1:201680/1‑91 (MQ=255)

                                                              ttCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaaa                              >  1:223014/1‑91 (MQ=255)

                                                              ttCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaaa                              >  2:1274845/1‑91 (MQ=255)

                                                               tCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaaaa                             <  1:539510/91‑1 (MQ=255)

                                                                  aCAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAag                          >  2:1404913/1‑91 (MQ=255)

                                                                  aCAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAag                          >  2:2264738/1‑91 (MQ=255)

                                                                  aCAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAag                          >  1:2879776/1‑91 (MQ=255)

                                                                   cAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAaga                         <  1:2946603/91‑1 (MQ=255)

                                                                    aGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAACGCATATTTTAGAAAAAAagag                        >  2:861564/1‑91 (MQ=255)

                                                                     gAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAGATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAgaga                       <  2:1779912/91‑1 (MQ=255)

                                                                     gAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAagaat                       <  2:1702170/91‑3 (MQ=255)

                                                                     gAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAgaga                       <  1:863228/91‑1 (MQ=255)

                                                                      aaGTTACCGTTAATAAAAATGacggtaacttctgttgaacgcataaatccaacaagattttgtttaacctttttatatctactcaacctat                      <  1:2081783‑M2/91‑71 (MQ=255)

                                                                       aGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAAt                     >  1:2588767/1‑91 (MQ=255)

                                                                        gTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAAtt                    >  2:2407079/1‑91 (MQ=255)

                                                                        gTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAAtt                    <  1:3645222/91‑1 (MQ=255)

                                                                          taacGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATtat                  <  2:2851178/88‑1 (MQ=255)

                                                                          TACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATtat                  <  1:3775729‑M1/91‑1 (MQ=255)

                                                                           aCCGTTAATAAAAATGacggtaacttctgttgaacgcataaatccaacaagattttgtttaacctttttatatctactcaacctttcaaat                 <  2:571175‑M2/91‑76 (MQ=255)

                                                                           ACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCAAAAAAAAAAAAAAAAGAGAATtata                 >  2:2920688‑M1/1‑91 (MQ=255)

                                                                           ACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGAATGTTTTGTTATGTGTTGAAAATGAAAAAAAAAAAAAAAAAGAGAATtata                 >  2:2556284‑M1/1‑91 (MQ=255)

                                                                            CCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATtatat                <  1:1190801‑M1/91‑1 (MQ=255)

                                                                               TTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAAc             <  1:1599109‑M1/91‑1 (MQ=255)

                                                                                taataaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACt            <  1:2446768/91‑1 (MQ=255)

                                                                                  ataaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCa          >  2:3789138/1‑91 (MQ=255)

                                                                                   taaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaa         <  1:2363004/91‑1 (MQ=255)

                                                                                    aaaaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACccatt        <  1:599626‑M1/91‑6 (MQ=255)

                                                                                    aaaaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaag        >  2:636402/1‑91 (MQ=255)

                                                                                     aaaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaaga       >  1:2149474/1‑91 (MQ=255)

                                                                                     aaaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaaga       >  1:3838417/1‑91 (MQ=255)

                                                                                      aaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaagaa      >  2:1349484/1‑91 (MQ=255)

                                                                                      aaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaagaa      >  2:3862826/1‑91 (MQ=255)

                                                                                      aaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaagaa      >  1:1736022/1‑91 (MQ=255)

                                                                                       aaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGCtgattataactaccgtcatttttattaacggtaacttctgttgaacg     <  2:924078‑M2/91‑48 (MQ=255)

                                                                                        aTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAagaaga    <  2:3422721/91‑1 (MQ=255)

                                                                                        aTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAagaaga    <  2:1839309/91‑1 (MQ=255)

                                                                                         tGACGGTAGTTATAATCAGCACATGGATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAgaagaa   <  2:1137252/91‑1 (MQ=255)

AAAGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAAT  >  NC_012417/421‑601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.