BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	161003 =	186 (0.980)	18 (0.120)	10/124	NT	12.3%	intergenic (+17/+114)	deoB/phnE_1	Phosphopentomutase/Phosphate‑import permease protein PhnE
*	?	USA300TCH1516_ALE	161059 =	113 (0.770)	18 (0.120)	10/124	NT	12.3%	intergenic (+73/+58)	deoB/phnE_1	Phosphopentomutase/Phosphate‑import permease protein PhnE

Only 100 of 237 total aligned reads displayed.

TTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAT  >  USA300TCH1516_ALE/160969‑161149

   aaGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATtata                                                                                         <  2:1974309/91‑1 (MQ=255)

    aGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataa                                                                                        >  2:223432/1‑91 (MQ=255)

    aGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataa                                                                                        >  2:221543/1‑91 (MQ=255)

     ggAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataat                                                                                       >  1:2704636/1‑91 (MQ=255)

     ggAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataat                                                                                       >  1:397727/1‑91 (MQ=255)

      gAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataata                                                                                      <  1:402349/91‑1 (MQ=255)

        aTTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATaga                                                                                    <  1:243072/91‑1 (MQ=255)

          tGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAgaga                                                                                  >  2:207402/1‑91 (MQ=255)

           gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaa                                                                                 >  1:3464515/1‑91 (MQ=255)

           gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaa                                                                                 >  2:2557334/1‑91 (MQ=255)

            aaaTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaaa                                                                                >  1:1154628/1‑91 (MQ=255)

            aaaTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaaa                                                                                >  2:663992/1‑91 (MQ=255)

              aTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACg                                                                              <  1:2137567/91‑1 (MQ=255)

               tAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGt                                                                             >  2:3314618/1‑91 (MQ=255)

               tAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGt                                                                             >  2:3485387/1‑91 (MQ=255)

               tAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGt                                                                             <  1:2820890/91‑1 (MQ=255)

                    tAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGAc                                                                        >  1:466576/1‑91 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       >  2:3261742/1‑91 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       <  2:1965982/91‑1 (MQ=255)

                      aaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACgg                                                                      <  2:831173/91‑1 (MQ=255)

                       aTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGt                                                                     <  1:1880314/91‑1 (MQ=255)

                       aTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGt                                                                     >  1:1870593/1‑91 (MQ=255)

                       aTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGt                                                                     <  1:1508527/91‑1 (MQ=255)

                       aTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGt                                                                     >  1:3340926/1‑91 (MQ=255)

                         ttAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAg                                                                   >  2:1111634/1‑91 (MQ=255)

                         ttAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAg                                                                   >  1:1181028/1‑91 (MQ=255)

                          tAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAgg                                                                  >  2:283985/1‑91 (MQ=255)

                          ctattataataaaaacagcagtgaagaaaactattgttatagttaacttcactgctgtttttatAATAATAGAGAAACGTAAGACGGTAgg                                                                  >  1:738337‑M2/65‑91 (MQ=255)

                           aGATATTATAAAGACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGa                                                                 <  2:3229955/91‑1 (MQ=255)

                           aGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGa                                                                 >  2:1861479/1‑91 (MQ=255)

                           aGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGa                                                                 <  2:3814956/91‑1 (MQ=255)

                            gATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGAc                                                                >  2:1874345/1‑91 (MQ=255)

                             atatTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGAct                                                               <  1:631498/91‑1 (MQ=255)

                               attatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtc                                                             >  1:2758670/1‑91 (MQ=255)

                                ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct                                                            <  2:520306/91‑1 (MQ=255)

                                ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct                                                            <  2:1568390/91‑1 (MQ=255)

                                ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct                                                            <  1:911939/91‑1 (MQ=255)

                                ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTGTTATTATAATAGAGAAACGTAAGACGGTAGGActtct                                                            >  2:3013013/1‑91 (MQ=255)

                                  ATAAAAACAGCAGTGAAGAAAACTATTGTTATAGTTAACTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTa                                                          <  2:3759665‑M1/91‑1 (MQ=255)

                                     AAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAttt                                                       >  2:379091‑M1/1‑91 (MQ=255)

                                     AAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAttt                                                       <  1:3163301‑M1/91‑1 (MQ=255)

                                     AAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAttt                                                       <  2:1752535‑M1/91‑1 (MQ=255)

                                     AAAACAGCAGCGAAGTTAACTATAACAATAGTTCTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAttt                                                       <  1:20600‑M1/91‑1 (MQ=255)

                                       AACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAg                                                     >  1:921133‑M1/1‑91 (MQ=255)

                                       AACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAg                                                     >  2:131481‑M1/1‑91 (MQ=255)

                                          AGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAg                                                  <  1:1347983‑M1/91‑1 (MQ=255)

                                          AGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAg                                                  >  2:2675850‑M1/1‑91 (MQ=255)

                                           GCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGt                                                 >  2:2880000‑M1/1‑91 (MQ=255)

                                            CAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTa                                                <  2:1905630‑M1/91‑1 (MQ=255)

                                            CAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTa                                                <  1:3378751‑M1/91‑1 (MQ=255)

                                              GTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATc                                              <  2:3428893‑M1/91‑1 (MQ=255)

                                               TGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATcc                                             >  1:3229147‑M1/1‑91 (MQ=255)

                                                GAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCt                                            >  2:392878‑M1/1‑91 (MQ=255)

                                                  AGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGa                                          >  1:1889248‑M1/1‑91 (MQ=255)

                                                   gaaaactattgttatagttaacttcactgccgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAt                                         >  1:2592094‑M2/40‑91 (MQ=255)

                                                   GTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAt                                         <  2:909645‑M1/91‑1 (MQ=255)

                                                    ttAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAtt                                        <  1:215458/91‑1 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       <  2:2712983/91‑1 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       <  2:1397424/91‑1 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       >  1:2671527/1‑91 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       <  1:2259293/91‑1 (MQ=255)

                                                     aaactattgttatagttaacttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       >  2:29527‑M2/38‑91 (MQ=255)

                                                       actattgttatagttttcttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTaa                                     >  1:3574953‑M2/36‑91 (MQ=255)

                                                       aCTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTaa                                     >  1:2869617/1‑91 (MQ=255)

                                                         tataACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATg                                   <  1:1726520/91‑1 (MQ=255)

                                                            aaCAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTa                                <  2:280359/91‑1 (MQ=255)

                                                             aCAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTaa                               <  1:3009050/91‑1 (MQ=255)

                                                               aaTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGa                                                                         <  1:1991805/47‑1 (MQ=255)

                                                               aaTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAAc                             >  2:935088/1‑91 (MQ=255)

                                                               aaTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAAc                             >  1:3351092/1‑91 (MQ=255)

                                                               aaTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAAc                             >  2:160632/1‑91 (MQ=255)

                                                                aTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACa                            <  1:1285208/91‑1 (MQ=255)

                                                                aTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACa                            >  2:3009954/1‑91 (MQ=255)

                                                                 tAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACaa                           <  1:232158/91‑1 (MQ=255)

                                                                 tAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATCTAGGAGTATCCTGATTTAATGTTAAACaa                           <  1:589543/91‑1 (MQ=255)

                                                                 tAGTTTTCTGCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACaa                           <  1:3480793/91‑1 (MQ=255)

                                                                   gTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATa                         >  2:2084579/1‑91 (MQ=255)

                                                                   gTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATa                         <  1:1861479/91‑1 (MQ=255)

                                                                   gTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATa                         >  1:1067347/1‑91 (MQ=255)

                                                                    ttttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATAc                        <  2:1298455/91‑1 (MQ=255)

                                                                    ttttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATAc                        <  2:498317/91‑1 (MQ=255)

                                                                    ttttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATAc                        >  2:2316905/1‑91 (MQ=255)

                                                                     tttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACg                       <  2:3594617/91‑1 (MQ=255)

                                                                     tttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACg                       >  2:920923/1‑91 (MQ=255)

                                                                     tttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACg                       <  1:708020/91‑1 (MQ=255)

                                                                      ttcttcACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGt                      >  2:231074/1‑91 (MQ=255)

                                                                       acttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGtt                     >  2:3103804‑M2/20‑91 (MQ=255)

                                                                          tcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTc                  <  2:431338‑M2/75‑1 (MQ=255)

                                                                                ctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTg            >  2:1126517‑M2/11‑91 (MQ=255)

                                                                                 tgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGa           <  1:159953‑M2/82‑1 (MQ=255)

                                                                                  gtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGaa          >  2:2475646‑M2/9‑91 (MQ=255)

                                                                                    ttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAcc        >  1:244034‑M2/7‑91 (MQ=255)

                                                                                    ttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAcc        >  2:3541491‑M2/7‑91 (MQ=255)

                                                                                    ttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAcc        >  1:3004448‑M2/7‑91 (MQ=255)

                                                                                       tatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGa     <  1:1809075‑M2/88‑1 (MQ=255)

                                                                                       tatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGa     <  2:786686‑M2/88‑1 (MQ=255)

                                                                                       tatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGa     <  1:308120‑M2/88‑1 (MQ=255)

                                                                                       tatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGa     >  1:3808552‑M2/4‑91 (MQ=255)

                                                                                         tTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGaaa   >  1:3764744‑M2/2‑91 (MQ=255)

                                                                                          tataATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAt  <  1:3169041/91‑1 (MQ=255)

TTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAT  >  USA300TCH1516_ALE/160969‑161149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.