BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 371234	159 (0.830)	28 (0.160)	14/150	NT	14.9%	coding (707/1362 nt)	ylbJ	Sporulation integral membrane protein YlbJ
*	?	USA300TCH1516_ALE	= 371261	171 (0.960)	28 (0.160)	14/150	NT	14.9%	coding (680/1362 nt)	ylbJ	Sporulation integral membrane protein YlbJ

Only 100 of 222 total aligned reads displayed.

ACAAATGTGATGACTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTAATCAATAATC  >  USA300TCH1516_ALE/371171‑371348

aCAAATGTGATGACTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTg                                                                                         >  1:3130481/1‑91 (MQ=255)

 cAAATGTGATGACTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGa                                                                                        <  1:3348133‑M2/91‑2 (MQ=255)

   aaTGTGATGACTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGaaa                                                                                      >  1:3769456‑M2/1‑88 (MQ=255)

      gtgATGACTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTg                                                                                   <  2:542865/91‑1 (MQ=255)

      gggatgatGAAAGTTATCCAAATGTATAGATTCCCATGCGGCATTAATCCGAAAGTTTTAGCAGCGATAATCATAAGAGTTGCTGAAACTg                                                                                   <  2:3619258/89‑1 (MQ=255)

          tgaCTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGa                                                                               <  1:1879842/91‑1 (MQ=255)

           gaCTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGaa                                                                              >  2:855475/1‑91 (MQ=255)

            aCTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTGTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGaaa                                                                             <  2:3598454/91‑1 (MQ=255)

             cTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGaaaa                                                                            >  1:2971648/1‑91 (MQ=255)

              tAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAg                                                                           <  1:2143135/91‑1 (MQ=255)

               aaaGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGc                                                                          <  1:3835888/91‑1 (MQ=255)

                   ttATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGt                                                                      <  2:1030214/91‑1 (MQ=255)

                    tATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTc                                                                     <  1:2907915/91‑1 (MQ=255)

                      tCCAAAAGTATAAATTCCAATGCGGCATCAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCAAGTCGc                                                                   >  2:184911/1‑91 (MQ=255)

                        cAAAAGTATAAATTCCAATGCGGCATTAATCCTACAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGACGCaa                                                                 >  2:3572610/1‑91 (MQ=255)

                        cAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCaa                                                                 <  1:1260719/91‑1 (MQ=255)

                          aaaGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCaata                                                               <  1:1230148/91‑1 (MQ=255)

                          aaaGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCaata                                                               >  1:798465/1‑91 (MQ=255)

                            aGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCCGAAACTGTTGAAAAGCCAGTCGCaataat                                                             <  2:3011792/91‑1 (MQ=255)

                             gTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATc                                                            <  2:3766012/91‑1 (MQ=255)

                              tataAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGc                                                                   >  2:1244933/1‑83 (MQ=255)

                               ataAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGt                                                          >  2:3044108/1‑91 (MQ=255)

                                taAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTg                                                         <  1:2507804/91‑1 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGc                                                       >  1:2814313/1‑91 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGc                                                       >  1:857658/1‑91 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGc                                                       >  2:1808743/1‑91 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGc                                                       >  1:1689640/1‑91 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGc                                                       >  2:2891049/1‑91 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGc                                                       <  1:1838379/91‑1 (MQ=255)

                                  aaTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTAAAAAGCCAGTCGCAATAATCGTGGc                                                       >  1:3618626/1‑91 (MQ=255)

                                   aTTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCt                                                      <  1:476753/91‑1 (MQ=255)

                                    ttCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCtt                                                     >  2:3724300/1‑91 (MQ=255)

                                     tCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTtc                                                    <  2:2656209/91‑1 (MQ=255)

                                      tcAATGCGTCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGTCATGCCAGTCGCAATAATCGTGGCTtct                                                   <  2:1433993/90‑1 (MQ=255)

                                      ccAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTtct                                                   <  2:165804/91‑1 (MQ=255)

                                       cAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCt                                                      >  1:1797219/1‑87 (MQ=255)

                                       cAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTtctc                                                  <  1:2250583/91‑1 (MQ=255)

                                        aaTGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCg                                                 <  2:1116745/91‑1 (MQ=255)

                                          tGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGtt                                               <  2:431555/91‑1 (MQ=255)

                                           gCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGttt                                              >  2:1823626/1‑91 (MQ=255)

                                           gCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGttt                                              >  1:456691/1‑91 (MQ=255)

                                            cGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTttg                                             <  2:2854781/91‑1 (MQ=255)

                                             ggCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTttgt                                            >  2:1121032/1‑91 (MQ=255)

                                               cATTTATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTttgttg                                          >  2:586409/1‑91 (MQ=255)

                                               cATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTttgttg                                          <  2:3130481/91‑1 (MQ=255)

                                                aTTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTtgttgt                                         >  2:2063382/1‑91 (MQ=255)

                                                aTTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTtgttgt                                         >  1:2632456/1‑91 (MQ=255)

                                                 ttAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTa                                        >  2:2145082/1‑91 (MQ=255)

                                                  tAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTAc                                       <  1:1107624/91‑1 (MQ=255)

                                                   aaTCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttag                                      <  1:1621618‑M2/91‑52 (MQ=255)

                                                   aaTCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACa                                      <  2:2002105/91‑1 (MQ=255)

                                                      ccTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATcc                                   >  2:2317636/1‑91 (MQ=255)

                                                       cTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATccc                                  <  1:2042884/91‑1 (MQ=255)

                                                       cTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATccc                                  >  1:2790422/1‑91 (MQ=255)

                                                       cTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATccc                                  <  1:3075971/91‑1 (MQ=255)

                                                       cTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATccc                                  >  1:3437643/1‑91 (MQ=255)

                                                        tAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatc                                 <  1:1859885‑M2/91‑57 (MQ=255)

                                                          aaGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTg                               >  1:2738966/1‑91 (MQ=255)

                                                            gTTTTAGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacat                             <  1:2307112‑M2/91‑61 (MQ=255)

                                                             ttttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCtt                            >  1:2710898/1‑91 (MQ=255)

                                                             ttttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCtt                            >  1:260054/1‑91 (MQ=255)

                                                             ttttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCtt                            >  1:350706/1‑91 (MQ=255)

                                                             ttttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCtt                            >  1:258106/1‑91 (MQ=255)

                                                              tttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTta                           <  1:1046603/91‑1 (MQ=255)

                                                               ttAGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttg                          <  2:370471‑M2/91‑64 (MQ=255)

                                                               ttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTtat                          <  2:1549462/91‑1 (MQ=255)

                                                               ttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTtat                          <  1:3371337/91‑1 (MQ=255)

                                                               ttAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTtat                          <  2:3380676/91‑1 (MQ=255)

                                                                tAGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgt                         <  2:1491931‑M2/91‑65 (MQ=255)

                                                                tAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATccc                                  >  1:59779/1‑82 (MQ=255)

                                                                tAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTtata                         >  1:920471/1‑91 (MQ=255)

                                                                 aGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtc                        <  2:3737417‑M2/91‑66 (MQ=255)

                                                                 aGCAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtc                        <  2:3738674‑M2/91‑66 (MQ=255)

                                                                 aGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAg                        <  2:1715069/91‑1 (MQ=255)

                                                                  gCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGa                       <  1:3804585/91‑1 (MQ=255)

                                                                  gCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGa                       >  2:2579187/1‑91 (MQ=255)

                                                                  gCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGa                       <  2:2613800/91‑1 (MQ=255)

                                                                   cAACGATAGTCATAAAAGTTGCTGaaaaatgaggattaatgccgcattggaatttatacttttggataactttagacctgacatttgtcgt                      <  2:593037‑M2/91‑68 (MQ=255)

                                                                   cAACGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtcgt                      <  2:3276672‑M2/91‑68 (MQ=255)

                                                                   cAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGac                      <  2:2582498/91‑1 (MQ=255)

                                                                   cAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGac                      >  2:1982131/1‑91 (MQ=255)

                                                                   cAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGac                      <  1:249563/91‑1 (MQ=255)

                                                                     aCGATAATCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtcgtga                    <  2:2257066‑M2/91‑70 (MQ=255)

                                                                     aCGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGacac                    >  1:903857/1‑91 (MQ=255)

                                                                     aCGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGacac                    >  1:2640154/1‑91 (MQ=255)

                                                                      cGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACg                   <  2:2433657/91‑1 (MQ=255)

                                                                      cGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACg                   <  1:1741699/91‑1 (MQ=255)

                                                                      cGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACg                   >  1:1453759/1‑91 (MQ=255)

                                                                      cGATAATCATAAAAGTTGCTAaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtcgtgac                   <  1:87117‑M2/91‑71 (MQ=255)

                                                                           aTCATAAAAGTTGCTAaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtcgtgactgcaa              >  1:210161‑M2/1‑16 (MQ=255)

                                                                            tCATAAAAGTTGCTGaaactttaggattaatgccgcattggaatttatacttttggataactttagtcatcacatttgtcgtgactgcaat             <  2:2906729‑M2/91‑77 (MQ=255)

                                                                            tCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGt             >  1:3336621/1‑91 (MQ=255)

                                                                            tCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGt             >  1:366383/1‑91 (MQ=255)

                                                                              aTAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTaa           <  1:2394222/91‑1 (MQ=255)

                                                                              aTAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTaa           <  1:287612/91‑1 (MQ=255)

                                                                              aTAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTaa           <  2:1141003/91‑1 (MQ=255)

                                                                               tAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTAAt          >  2:1363627/1‑91 (MQ=255)

                                                                                   aGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTAATCaat      <  1:219634/91‑1 (MQ=255)

                                                                                   aGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTAATCaat      <  2:258027/91‑1 (MQ=255)

                                                                                     ttGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTAATCaataa    <  2:3315182/91‑1 (MQ=255)

ACAAATGTGATGACTAAAGTTATCCAAAAGTATAAATTCCAATGCGGCATTAATCCTAAAGTTTTAGCAACGATAATCATAAAAGTTGCTGAAACTGTTGAAAAGCCAGTCGCAATAATCGTGGCTTCTCGTTTGTTGTACATCCCTTGCTTATAGACACGATTAGTAATCAATAATC  >  USA300TCH1516_ALE/371171‑371348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.