New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 494152 =175 (0.920)22 (0.130) 11/142 NT 13.3% intergenic (+101/+68) bltD_1/USA300HOU_RS02360 Spermine/spermidine acetyltransferase/hypothetical protein
?USA300TCH1516_ALE 494194 = 133 (0.790)intergenic (+143/+26) bltD_1/USA300HOU_RS02360 Spermine/spermidine acetyltransferase/hypothetical protein

Only 100 of 213 total aligned reads displayed.

ATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATCC  >  USA300TCH1516_ALE/494104‑494284
                                                                                          |                                                                                          
 tAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaa                                                                                           >  2:1389055/1‑91 (MQ=255)
 tAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaa                                                                                           >  2:197576/1‑91 (MQ=255)
  aaaGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaac                                                                                          >  2:1812476/1‑91 (MQ=255)
   aaGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaact                                                                                         <  2:475874/91‑1 (MQ=255)
   aaGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaact                                                                                         <  1:2425/91‑1 (MQ=255)
   aaGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGattaact                                                                                         >  2:3694517/1‑91 (MQ=255)
    gatgagtctatcaattaatcgcaactagcaatataacttaagttAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaactt                                                                                        >  1:2334971‑M1/45‑91 (MQ=255)
     ggTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaactta                                                                                       >  1:2638041/1‑91 (MQ=255)
       tGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAg                                                                                     <  1:3372647/91‑1 (MQ=255)
       tGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAg                                                                                     <  1:2910931/91‑1 (MQ=255)
       tGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAg                                                                                     >  1:2280016/1‑91 (MQ=255)
           ttttGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTtat                                                                                 <  2:756431/91‑1 (MQ=255)
               gTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTg                                                                             >  1:2765918/1‑91 (MQ=255)
               gTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTg                                                                             >  1:1562105/1‑91 (MQ=255)
               caattaatcgcaactagcaatataacttaagttAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTg                                                                             >  2:3456505‑M1/34‑91 (MQ=255)
                 tataGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCt                                                                           <  2:570196/91‑1 (MQ=255)
                  ttaatcgcaactagcaatataacttaagttaagcgacctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTa                                                                          >  1:389898‑M2/73‑91 (MQ=255)
                  ataGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTa                                                                          >  2:1747082/1‑91 (MQ=255)
                    aGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaacttaa                                                                                      <  2:2090515/77‑1 (MQ=255)
                         atcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGa                                                                   >  1:319855/1‑91 (MQ=255)
                         atcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGa                                                                   <  2:25968/91‑1 (MQ=255)
                         atcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGa                                                                   <  1:2774449/91‑1 (MQ=255)
                          tcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGAt                                                                  <  2:339163/91‑1 (MQ=255)
                           cGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGAtt                                                                 >  1:3672730/1‑91 (MQ=255)
                           cGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGAtt                                                                 >  2:3235477/1‑91 (MQ=255)
                             gACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTaa                                                               >  1:3587144/1‑91 (MQ=255)
                             gACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTaa                                                               >  1:1205115/1‑91 (MQ=255)
                             gACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTaa                                                               >  2:1842666/1‑91 (MQ=255)
                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                              >  2:3872719/1‑91 (MQ=255)
                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                              >  2:2670327/1‑91 (MQ=255)
                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                              >  1:2349220/1‑91 (MQ=255)
                               cAATTTACTGTAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAtt                                                             <  1:3718670/91‑1 (MQ=255)
                               cAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAtt                                                             >  1:2202179/1‑91 (MQ=255)
                                 aTTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGa                                                           <  2:2467705/91‑1 (MQ=255)
                                  tttACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGAt                                                          >  1:2793744/1‑91 (MQ=255)
                                  tttACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGAt                                                          <  2:3515476/91‑1 (MQ=255)
                                   ttACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATa                                                         >  1:3816566/1‑91 (MQ=255)
                                     aCTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGa                                                       >  1:7446/1‑91 (MQ=255)
                                     aCTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGa                                                       >  1:7251/1‑91 (MQ=255)
                                      cTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGAc                                                      >  2:2052785/1‑91 (MQ=255)
                                      cTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGAc                                                      >  1:1682422/1‑91 (MQ=255)
                                       tataGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACt                                                     >  1:3124461/1‑91 (MQ=255)
                                       tataGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACt                                                     <  1:420052/91‑1 (MQ=255)
                                        ataGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtc                                                    <  2:516769/91‑1 (MQ=255)
                                        ataGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtc                                                    <  1:3874747/91‑1 (MQ=255)
                                         taGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtca                                                   <  2:1613620/91‑1 (MQ=255)
                                          aGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcat                                                  <  1:2018936/91‑1 (MQ=255)
                                          aGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcat                                                  <  1:2954768/91‑1 (MQ=255)
                                          aGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcat                                                  <  2:3035030/91‑1 (MQ=255)
                                              aaaaGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtt                                              <  2:1213018/91‑1 (MQ=255)
                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                            >  2:2416692‑M1/1‑91 (MQ=255)
                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                            <  2:282501‑M1/91‑1 (MQ=255)
                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                            <  2:1086032‑M1/91‑1 (MQ=255)
                                                 agcgacctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAttttt                                           >  1:582983‑M2/42‑91 (MQ=255)
                                                   CGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgc                                         >  2:3491011‑M1/1‑91 (MQ=255)
                                                    gacctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                        >  1:1475100‑M2/39‑91 (MQ=255)
                                                    gacctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                        >  1:2402075‑M2/39‑91 (MQ=255)
                                                     ACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcgc                                       <  1:3278143‑M1/91‑1 (MQ=255)
                                                      cctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCt                                      >  2:3647422‑M2/37‑91 (MQ=255)
                                                      cctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCt                                      >  2:3646796‑M2/37‑91 (MQ=255)
                                                         aGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTc                                   >  1:2713414/1‑91 (MQ=255)
                                                          tggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCg                                  >  2:2491894‑M2/33‑91 (MQ=255)
                                                          gTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCg                                  >  2:1997478/1‑91 (MQ=255)
                                                            gAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCgag                                <  2:2708425/91‑1 (MQ=255)
                                                             aaCAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCgaga                               <  1:1304683/91‑1 (MQ=255)
                                                              aCAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGAt                              >  1:1816927/1‑91 (MQ=255)
                                                               cAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATg                             >  2:2786600/1‑91 (MQ=255)
                                                                  ttGACATATATCCACAGGTCGCTTAACTTCAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTc                          <  1:2157786/91‑1 (MQ=255)
                                                                  tgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCCGTCGAGATGGTc                          >  2:1271189‑M2/25‑91 (MQ=255)
                                                                   tGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCt                         >  1:2568882/1‑91 (MQ=255)
                                                                   tGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCt                         >  2:3149817/1‑91 (MQ=255)
                                                                    gACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtt                        >  2:1025853/1‑91 (MQ=255)
                                                                    gACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTACTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtt                        >  1:3367589/1‑91 (MQ=255)
                                                                     aCATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAttt                                             >  1:1391498/1‑69 (MQ=255)
                                                                     aCATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCttt                       <  2:188010/91‑1 (MQ=255)
                                                                      cATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtttt                      <  1:2038036/91‑1 (MQ=255)
                                                                        tatatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTtta                    <  2:1297781/91‑1 (MQ=255)
                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                   <  2:2319945/91‑1 (MQ=255)
                                                                          tatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttatt                  >  1:1373536/1‑91 (MQ=255)
                                                                           atCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttatta                 <  2:1408690/91‑1 (MQ=255)
                                                                            tCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaa                <  1:2117791/91‑1 (MQ=255)
                                                                              cacaGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaaaa              >  1:3789775/1‑91 (MQ=255)
                                                                               acaGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaaaaa             <  1:2670327/91‑1 (MQ=255)
                                                                                caGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAAt            >  2:1550415/1‑91 (MQ=255)
                                                                                caGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAAt            >  1:1247615/1‑91 (MQ=255)
                                                                                 aggtcgcttAACTTGAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATg           <  2:850847‑M2/82‑1 (MQ=255)
                                                                                  ggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGc          <  2:2280016‑M2/83‑1 (MQ=255)
                                                                                   gtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGcc         >  1:1187091‑M2/8‑91 (MQ=255)
                                                                                    tcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCg        >  1:2959471‑M2/7‑91 (MQ=255)
                                                                                    tcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCg        <  2:2375244‑M2/85‑1 (MQ=255)
                                                                                     cgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATAGTCTTTTTATTAAAAATGCCGt       >  2:3135665‑M2/6‑91 (MQ=255)
                                                                                     cgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATAGTCTTTTTATTAAAAACGCCGt       >  2:3135367‑M2/6‑91 (MQ=255)
                                                                                      gcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTa      <  1:1676769‑M2/87‑1 (MQ=255)
                                                                                      gcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTa      >  1:1018912‑M2/5‑91 (MQ=255)
                                                                                       cttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTaa     <  2:100396‑M2/88‑1 (MQ=255)
                                                                                       cttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTaa     <  1:15108‑M2/88‑1 (MQ=255)
                                                                                        ttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTc                                   <  2:863497‑M2/58‑1 (MQ=255)
                                                                                        ttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTc                                   >  1:863497‑M2/3‑60 (MQ=255)
                                                                                        ttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAAt    >  2:1195199‑M2/3‑91 (MQ=255)
                                                                                          aacttaaGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATcc  <  1:3667936/91‑1 (MQ=255)
                                                                                          |                                                                                          
ATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATCC  >  USA300TCH1516_ALE/494104‑494284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.