BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 518607	161 (0.850)	14 (0.080)	8/142	NT	8.0%	intergenic (+6675/‑88)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 518622	180 (1.070)	14 (0.080)	8/142	NT	8.0%	intergenic (+6690/‑73)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 237 total aligned reads displayed.

CTAATATCTTTTAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAACCTATTTTA  >  USA300TCH1516_ALE/518532‑518712

      tCTTTTAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgtt                                                                                      <  2:1193317‑M2/91‑7 (MQ=255)

      tCTTTTAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgtt                                                                                      <  2:967455‑M2/91‑7 (MQ=255)

      tCTTTTAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgtt                                                                                      >  1:2190670‑M2/1‑85 (MQ=255)

       cTTTTAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgtta                                                                                     >  2:2167255‑M2/1‑84 (MQ=255)

       cTTTTAAATAGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgtta                                                                                     >  2:185021‑M2/1‑84 (MQ=255)

        ttttAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgttac                                                                                    <  1:2909131‑M2/91‑9 (MQ=255)

         tttAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAagtgttact                                                                                   <  2:1369556‑M2/91‑10 (MQ=255)

              aTCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACtatata                                                                              >  2:1920345/1‑91 (MQ=255)

              aTCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACtatata                                                                              >  2:3722637/1‑91 (MQ=255)

               tCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaa                                                                             <  1:1109815/91‑1 (MQ=255)

               tCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaa                                                                             <  2:349125/91‑1 (MQ=255)

                cGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaat                                                                            <  2:1403743/91‑1 (MQ=255)

                cGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaat                                                                            <  2:1648646/91‑1 (MQ=255)

                cGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaat                                                                            <  2:1648092/91‑1 (MQ=255)

                 gAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaatt                                                                           >  2:1096334/1‑91 (MQ=255)

                   aGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaattaa                                                                         >  1:1136911/1‑91 (MQ=255)

                   aGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaattaa                                                                         >  2:226527/1‑91 (MQ=255)

                   aGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaattaa                                                                         >  1:2231608/1‑91 (MQ=255)

                   aGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaattaa                                                                         <  1:2067918/91‑1 (MQ=255)

                   aGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAATGCATAAATAAAACTAACTTTTGTCAAAGAAGTGTTACTATAtaattaa                                                                         >  2:2417324/1‑91 (MQ=255)

                    gTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATAtaattaat                                                                        <  2:305188/91‑1 (MQ=40)

                     tACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATa                                                                       <  2:2148233/91‑1 (MQ=40)

                     tACAAAAAGGAAATTAATTATTATACAATAGACAAGCAATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATa                                                                       <  1:1793646/91‑1 (MQ=255)

                      aCAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATAc                                                                      >  2:1747099/1‑91 (MQ=40)

                          aaaGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACtttt                                                                  >  2:841956/1‑91 (MQ=255)

                          aaaGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTCTTACTATATAATTAATACtttt                                                                  >  2:3132852/1‑91 (MQ=255)

                           aaGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTg                                                                 >  2:630928/1‑91 (MQ=255)

                             ggAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGaa                                                               >  2:559867/1‑91 (MQ=255)

                             ggAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAagtgttacttatgcaatagcttgtctatt                                                               <  2:3684191‑M2/91‑30 (MQ=255)

                              gAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGaaa                                                              >  1:3646139/1‑91 (MQ=255)

                               agattaagtaTTATACAAGAGACAAGCTACTGCATAAGTAACACTGACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAg                                                             <  2:2898578/89‑1 (MQ=17)

                               aaaTTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAg                                                             <  2:28767/91‑1 (MQ=255)

                               aaaTTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAg                                                             <  1:3544013/91‑1 (MQ=255)

                               aaaTTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAg                                                             >  1:877483/1‑91 (MQ=255)

                                aattaattATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGt                                                            <  2:135253/91‑1 (MQ=255)

                                aattaattATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGt                                                            <  1:3362087/91‑1 (MQ=255)

                                aattaattATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGt                                                            >  1:1696508/1‑91 (MQ=255)

                                 attaattaTTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTa                                                           >  2:1159172/1‑91 (MQ=255)

                                 attaattaTTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTa                                                           >  2:1687411/1‑91 (MQ=255)

                                  ttaattaTTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTaa                                                          >  1:518672/1‑91 (MQ=255)

                                    aattaTTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACt                                                        <  1:1642330/91‑1 (MQ=255)

                                     attattATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTa                                                       <  2:759170/91‑1 (MQ=255)

                                         ttatACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTc                                                   >  2:2502971/1‑91 (MQ=255)

                                            taCAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCaa                                                >  2:3283019/1‑91 (MQ=255)

                                            taCAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCaa                                                <  2:106419/91‑1 (MQ=255)

                                             aCAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCaaa                                               >  1:1166204/1‑91 (MQ=255)

                                              cAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCaaaa                                              <  2:383639/91‑1 (MQ=255)

                                                 tAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAg                                           >  2:1812918/1‑91 (MQ=255)

                                                  aGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAgt                                          >  2:498374/1‑91 (MQ=255)

                                                    aCAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAgtgt                                        <  2:3552272/91‑1 (MQ=255)

                                                    aCAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAgtgt                                        <  1:3585097/91‑1 (MQ=255)

                                                     cAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGta                                       >  2:2999884/1‑91 (MQ=255)

                                                     cAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGta                                       >  1:3811067/1‑91 (MQ=255)

                                                      aaGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaa                                      <  2:1218720/91‑1 (MQ=255)

                                                      aaGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaa                                      >  1:1436440/1‑91 (MQ=255)

                                                       aGCTATTGCATGAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaa                                     <  2:762973/91‑1 (MQ=255)

                                                       aGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaa                                     >  2:2301324/1‑91 (MQ=255)

                                                        gCTATTGTATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaat                                    <  1:1938628/91‑1 (MQ=255)

                                                        gCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaat                                    >  2:3883807/1‑91 (MQ=255)

                                                        gCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaat                                    >  1:3198053/1‑91 (MQ=255)

                                                        gCTATCGCATAAGTAACACTAACTCTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaac                                    >  2:1297439/1‑90 (MQ=255)

                                                          tATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGtaaataa                                  <  1:1637115/91‑1 (MQ=255)

                                                            ttGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAg                                <  1:683649/91‑1 (MQ=255)

                                                            ttGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAg                                <  1:1535314/91‑1 (MQ=255)

                                                             tGCATAAGTAACACTAACTTTTGTCGAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAgg                               <  1:3601308/91‑1 (MQ=255)

                                                             tGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCa                                                 >  2:1674738/1‑73 (MQ=255)

                                                             tGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCa                                                 <  1:1674173/73‑1 (MQ=255)

                                                             tGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAgg                               >  1:734181/1‑91 (MQ=255)

                                                             tGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAgg                               <  1:2072998/91‑1 (MQ=255)

                                                              gCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGa                              <  2:294639/91‑1 (MQ=255)

                                                               cATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGaa                             >  2:3326555/1‑91 (MQ=255)

                                                                 tAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGc                           <  1:404986/91‑1 (MQ=255)

                                                                 tAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGc                           <  2:3783938/91‑1 (MQ=255)

                                                                  aaGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCg                          <  1:1608492/91‑1 (MQ=255)

                                                                   aGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGt                         >  2:1276065/1‑91 (MQ=255)

                                                                    gTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGta                        <  1:466773/91‑1 (MQ=255)

                                                                     tAACACTAACTTTTGTCAAAGAagtgttacttatgcaatagcttgtctattgtataataattaatttcctttttgtacttcgatttaaaag                       <  2:2090379‑M2/91‑70 (MQ=255)

                                                                     tAACACTAACTTTTGTCAAAGAagtgttacttatgcaatagcttgtctattgtataataattaatttcctttttgtacttcgatttaaaag                       <  1:2813351‑M2/91‑70 (MQ=255)

                                                                       acacTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTatat                     >  1:267502/1‑91 (MQ=255)

                                                                        cacTAACTTTTGTCAAAGAagtgttacttatgcaatagcttgtctattgtataataattaatttcctttttgtacttcgatttaaaagata                    <  1:583262‑M2/91‑73 (MQ=255)

                                                                        cacTAACTTTTGTCAAAGAagtgttacttatgcaatagcttgtctattgtataataattaatttcctttttgtacttcgatttaaaagata                    <  2:1576885‑M2/91‑73 (MQ=255)

                                                                         acTAACTTTTGTCAAAGAagtgttacttatgcaatagcttgtctattgtataataattaatttcctttttgtacttcgatttaaaagctat                   <  1:3494091‑M2/91‑74 (MQ=255)

                                                                         acTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCa                   >  1:1448573/1‑91 (MQ=255)

                                                                         acTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCa                   <  1:3572147/91‑1 (MQ=255)

                                                                         acTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCa                   <  2:2827281/91‑1 (MQ=255)

                                                                          cTAACTTTTGTCAAAGAagtgttacttatgcaatagcttgtctattgtataataattaatttcctttttgtacttcgatttaaaagatatt                  <  2:268017‑M2/91‑75 (MQ=255)

                                                                           tAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATg                 >  1:2551789/1‑91 (MQ=255)

                                                                           tAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATg                 >  1:1992704/1‑91 (MQ=255)

                                                                            aaCTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGa                <  1:784833/91‑1 (MQ=255)

                                                                            aaCTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGa                <  2:2241771/91‑1 (MQ=255)

                                                                              cTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAg              >  2:3616222/1‑91 (MQ=255)

                                                                               ttttGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGc             <  1:3784628/91‑1 (MQ=255)

                                                                               ttttGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGc             <  1:3243791/91‑1 (MQ=255)

                                                                                  tGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAAc          >  1:1829611/1‑91 (MQ=255)

                                                                                  tGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGAAAGCGTATATCATGAAGCAAc          >  1:1829392/1‑91 (MQ=255)

                                                                                   gTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAAcc         <  1:3132852/91‑1 (MQ=255)

                                                                                    tCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAACCt        >  1:1478281/1‑91 (MQ=255)

                                                                                       aagaagTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAgtg                                         >  1:3155878/1‑55 (MQ=255)

                                                                                       aagaagTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAACCTAtt     <  1:2301324/91‑1 (MQ=255)

                                                                                        agaaaTGTTACTATATAATTAATACTTTTGAAAGTATCTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAACCTAttt    <  2:3310048/91‑1 (MQ=255)

CTAATATCTTTTAAATCGAAGTACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTGTCAAAGAAGTGTTACTATATAATTAATACTTTTGAAAGTAACTAATTCCAAAACAGTGTAAATAAAGGAAGCGTATATCATGAAGCAACCTATTTTA  >  USA300TCH1516_ALE/518532‑518712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.