BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	598632 =	200 (1.050)	12 (0.080)	8/124	NT	8.4%	intergenic (+181/+101)	tuf/yxeP_2	Elongation factor Tu/putative hydrolase YxeP
*	?	USA300TCH1516_ALE	598687 =	107 (0.730)	12 (0.080)	8/124	NT	8.4%	intergenic (+236/+46)	tuf/yxeP_2	Elongation factor Tu/putative hydrolase YxeP

Only 100 of 222 total aligned reads displayed.

TGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGATTTTTAAAA  >  USA300TCH1516_ALE/598597‑598776

 gTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCa                                                                                          <  1:3757373/91‑1 (MQ=255)

  tttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAt                                                                                         >  1:836577/1‑91 (MQ=255)

  tttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAt                                                                                         >  1:1913388/1‑91 (MQ=255)

  tttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAt                                                                                         >  2:1799855/1‑91 (MQ=255)

   ttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCAtt                                                                                        <  1:2626468/91‑1 (MQ=255)

    taaataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTa                                                                                       >  1:2843030/1‑91 (MQ=255)

      aataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGt                                                                                     >  1:2589792/1‑91 (MQ=255)

      aataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGt                                                                                     <  2:3647971/91‑1 (MQ=255)

       ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGtt                                                                                    <  1:2795888/91‑1 (MQ=255)

       ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGtt                                                                                    >  1:2052598/1‑91 (MQ=255)

       ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGtt                                                                                    >  1:929411/1‑91 (MQ=255)

          aaaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTAt                                                                                 <  1:1052710/91‑1 (MQ=255)

           aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCTTTTTCTATTTTGAAGGGAGCATTTCATTAGTTTATg                                                                                >  2:3700818/1‑91 (MQ=37)

           aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                                                >  2:1233357/1‑91 (MQ=255)

           aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                                                >  1:1116762/1‑91 (MQ=255)

           aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg                                                                                <  2:831981/91‑1 (MQ=255)

            aTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGt                                                                               >  2:604135/1‑91 (MQ=255)

            aTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGt                                                                               <  1:3374866/91‑1 (MQ=255)

             ttgttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtc                                                                              <  2:65334/91‑1 (MQ=255)

              tgttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtct                                                                             <  1:46858/91‑1 (MQ=255)

               gttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtctc                                                                            >  1:1797796/1‑91 (MQ=255)

               gttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGtctc                                                                            >  2:3334306/1‑91 (MQ=255)

                ttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCa                                                                           >  2:2353804/1‑91 (MQ=255)

                  tgagacataaactaatgAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGa                                                                         >  1:1069543‑M1/18‑91 (MQ=255)

                  gAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGa                                                                         >  1:119008/1‑91 (MQ=255)

                    gTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGAtt                                                                       <  1:2653756/91‑1 (MQ=255)

                     tCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTc                                                                      <  2:852703/91‑1 (MQ=255)

                      cTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCa                                                                     <  1:760661/91‑1 (MQ=255)

                      cTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCa                                                                     <  1:2782798/91‑1 (MQ=255)

                       ttGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCat                                                                    >  2:2796246/1‑91 (MQ=255)

                         ggACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCatat                                                                  >  1:1684885/1‑91 (MQ=255)

                           aCATTGTAAAATGCTCCCTTCAAAGTTTTCATTTGTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCt                                                                <  1:358435/91‑1 (MQ=255)

                             aTTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCttt                                                              <  2:2587455/91‑1 (MQ=255)

                             aTTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCttt                                                              >  2:2526317/1‑91 (MQ=255)

                              ttGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTc                                                             >  2:430395/1‑91 (MQ=255)

                              ttGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTc                                                             <  1:2114727/91‑1 (MQ=255)

                                gTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaa                                                           <  2:1475885/91‑1 (MQ=255)

                                gTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaa                                                           >  1:1846422/1‑91 (MQ=255)

                                gTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaa                                                           >  1:1313717/1‑91 (MQ=255)

                                 tAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaat                                                          <  1:1812949/91‑1 (MQ=255)

                                 tAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaat                                                          <  1:389957/91‑1 (MQ=255)

                                  aaaaTGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatt                                                         <  1:2528387/91‑1 (MQ=255)

                                   AAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatta                                                        <  1:1110722‑M1/91‑1 (MQ=255)

                                    AATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTCTATGTCTCAGATTCATATCTTTCaattaa                                                       <  1:3113786‑M1/91‑1 (MQ=255)

                                     ATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaattaat                                                      <  1:1827212‑M1/91‑1 (MQ=255)

                                         TCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTaa                                                  >  2:2127844‑M1/1‑91 (MQ=255)

                                            cttcaaagtagacattgaaaaaatgaaaactttgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATg                                               >  1:255863‑M2/47‑91 (MQ=255)

                                             ttcaaagtagacattgaaaaaatgaaaactttgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTCAATGc                                              >  2:3138491‑M2/46‑91 (MQ=255)

                                             ttcaaagtagacattgaaaaaatgaaaactttgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGc                                              >  2:1201120‑M2/46‑91 (MQ=255)

                                             TTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGc                                              >  2:137052‑M1/1‑91 (MQ=255)

                                             TTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGc                                              >  2:2390782‑M1/1‑91 (MQ=255)

                                              TCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCt                                             >  2:3390765‑M1/1‑91 (MQ=255)

                                                 AAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTaa                                          <  1:3664256‑M1/91‑1 (MQ=255)

                                                 AAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTaa                                          >  1:3650687‑M1/1‑91 (MQ=255)

                                                 AAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTaa                                          <  1:3455321‑M1/91‑1 (MQ=255)

                                                 AAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTaa                                          >  1:3227639‑M1/1‑91 (MQ=255)

                                                  agtagacattgaaaaaatgaaaactttgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAt                                         >  2:3683618‑M2/41‑91 (MQ=255)

                                                   GTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGcttactt                                        <  2:3093970‑M1/91‑4 (MQ=255)

                                                   GTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt                                        >  2:1132508‑M1/1‑91 (MQ=255)

                                                    TTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAttt                                       <  2:3401210‑M1/91‑1 (MQ=255)

                                                     tttCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTg                                      >  1:215711/1‑91 (MQ=255)

                                                      ttCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGt                                     <  2:2860201/91‑1 (MQ=255)

                                                       tCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGtt                                    >  1:458547/1‑91 (MQ=255)

                                                        cATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt                                        <  2:690320/86‑1 (MQ=255)

                                                        cATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt                                        >  1:690320/1‑86 (MQ=255)

                                                        cATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGttt                                   >  2:313057/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGtttt                                  >  2:162944/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGtttt                                  <  1:3654187/91‑1 (MQ=255)

                                                          ttttttCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTa                                 >  2:1999803/1‑91 (MQ=255)

                                                             tttCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAAt                              >  1:1448016/1‑91 (MQ=255)

                                                              ttCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATa                             <  2:2173732/91‑1 (MQ=255)

                                                              ttCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATa                             >  1:1332585/1‑91 (MQ=255)

                                                               tCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATAc                            >  1:300597/1‑91 (MQ=255)

                                                                cAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACt                           >  2:2080315/1‑91 (MQ=255)

                                                                cAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACt                           >  2:2080579/1‑91 (MQ=255)

                                                                   tGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGc                        >  1:2335363/1‑91 (MQ=255)

                                                                    gTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGct                       >  2:3073242/1‑91 (MQ=255)

                                                                    gTCTACTTCGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGct                       <  2:3367326/91‑1 (MQ=255)

                                                                       tACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTa                    >  1:2083520/1‑91 (MQ=255)

                                                                          tttgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAAtt                 >  2:3210331‑M2/17‑91 (MQ=255)

                                                                            tgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCt               <  2:90137‑M2/77‑1 (MQ=255)

                                                                            tgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCt               <  1:3158887‑M2/77‑1 (MQ=255)

                                                                            tgaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCt               <  1:565575‑M2/77‑1 (MQ=255)

                                                                             gaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTa              <  1:2302490‑M2/78‑1 (MQ=255)

                                                                             gaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTa              >  2:753984‑M2/14‑91 (MQ=255)

                                                                             gaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTa              >  1:289696‑M2/14‑91 (MQ=255)

                                                                             gaagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTa              <  1:1611449‑M2/78‑1 (MQ=255)

                                                                              aagggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTAt             <  2:1577914‑M2/79‑1 (MQ=255)

                                                                                gggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGa           >  2:3578565‑M2/11‑91 (MQ=255)

                                                                                 ggagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAt          >  2:3274138‑M2/10‑91 (MQ=255)

                                                                                  gagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAtt         <  1:1975514‑M2/83‑1 (MQ=255)

                                                                                  gagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAtt         >  2:675668‑M2/9‑91 (MQ=255)

                                                                                  gagcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAtt         >  1:2231227‑M2/9‑91 (MQ=255)

                                                                                    gcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAtttt       <  2:1413909‑M2/85‑1 (MQ=255)

                                                                                    gcatttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAtttt       <  2:2335132‑M2/85‑1 (MQ=255)

                                                                                     catttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGAttttt      >  2:2643505‑M2/6‑91 (MQ=255)

                                                                                      atttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGATTTTTa     >  2:2732548‑M2/5‑91 (MQ=255)

                                                                                       tttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGATTTTTaa    >  2:3176737‑M2/4‑91 (MQ=255)

                                                                                        ttCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGATTTTTaaa   >  2:306063‑M2/3‑91 (MQ=255)

                                                                                         tCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGATTTTTaaaa  >  1:661890‑M2/2‑91 (MQ=255)

TGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATTTGTTTTAAATACTTGCTCTAATTCTATGATTTTTAAAA  >  USA300TCH1516_ALE/598597‑598776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.