BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	646656 =	224 (1.180)	23 (0.140)	10/140	NT	11.5%	intergenic (+10/‑577)	lipL/galK	Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase
*	?	USA300TCH1516_ALE	646692 =	159 (0.960)	23 (0.140)	10/140	NT	11.5%	intergenic (+46/‑541)	lipL/galK	Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase

Only 100 of 242 total aligned reads displayed.

AAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGAA  >  USA300TCH1516_ALE/646602‑646782

  aaTGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAttt                                                                                          <  1:298124/91‑1 (MQ=255)

   aTGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAtttt                                                                                         <  1:2370138/91‑1 (MQ=255)

   aTGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAtttt                                                                                         <  2:2012118/91‑1 (MQ=255)

      aTTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGa                                                                                      >  2:1653128/1‑91 (MQ=255)

      aTTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGa                                                                                      >  1:201849/1‑91 (MQ=255)

      aTTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGa                                                                                      <  1:70123/91‑1 (MQ=255)

      aTTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGATATTTTTGa                                                                                      >  1:3719925/1‑91 (MQ=255)

         gaaagaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAg                                                                                   >  2:227768/1‑91 (MQ=255)

           aagaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTa                                                                                 <  1:1891317/91‑1 (MQ=255)

           aagaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTa                                                                                 >  2:2627447/1‑91 (MQ=255)

            agaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTAt                                                                                >  2:3823860/1‑91 (MQ=255)

            agaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTAt                                                                                <  1:3286441/91‑1 (MQ=255)

             gaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATc                                                                               >  2:2020855/1‑91 (MQ=255)

             gaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATc                                                                               <  1:2729684/91‑1 (MQ=255)

               aaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCa                                                                             <  2:2703941/91‑1 (MQ=255)

                 cAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATa                                                                           <  2:3263443/91‑1 (MQ=255)

                  aaGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaa                                                                          >  2:1766768/1‑91 (MQ=255)

                   aGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaa                                                                         >  2:1293611/1‑91 (MQ=255)

                   aGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaa                                                                         >  1:2460106/1‑91 (MQ=255)

                   aGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaa                                                                         >  2:1445670/1‑91 (MQ=255)

                    gAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaa                                                                        <  1:1277548/91‑1 (MQ=255)

                     aaaaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaaa                                                                       >  2:105181/1‑91 (MQ=255)

                      aaaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAg                                                                      <  2:37218/91‑1 (MQ=255)

                       aaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGc                                                                     <  2:1500721/91‑1 (MQ=255)

                       aaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGc                                                                     <  2:1915916/91‑1 (MQ=255)

                        aTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCa                                                                    >  2:494706/1‑91 (MQ=255)

                        aTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCa                                                                    <  1:3340245/91‑1 (MQ=255)

                         tGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCAt                                                                   >  2:3685656/1‑91 (MQ=255)

                         tGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCAt                                                                   >  1:826250/1‑91 (MQ=255)

                           aTAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaa                                                                 >  2:733675/1‑91 (MQ=255)

                            tAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaaa                                                                <  2:3468510/91‑1 (MQ=255)

                            tAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaaa                                                                <  1:2089276/91‑1 (MQ=255)

                             aGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAat                                                               <  2:128268/91‑1 (MQ=255)

                              gATCGAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAata                                                              <  1:3731196/91‑1 (MQ=255)

                              gATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAata                                                              <  1:141533/91‑1 (MQ=255)

                               aTCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAatat                                                             <  1:3030217/91‑1 (MQ=255)

                                tCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTCTTTTTGAAAGTATCCATAAAAAGCATAAATATg                                                            >  1:3177733/1‑91 (MQ=255)

                                tCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATg                                                            <  2:3672525/91‑1 (MQ=255)

                                  aaaTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGtt                                                          <  2:2828145/91‑1 (MQ=255)

                                    aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                        >  1:1092390/1‑91 (MQ=255)

                                     tGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAtt                                                       >  2:3602421/1‑91 (MQ=255)

                                       cAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGATAGTATCCATAAAAAGCATAAATATGTTATTGa                                                     >  2:1819065/1‑91 (MQ=255)

                                       cAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGa                                                     >  1:1750465/1‑91 (MQ=255)

                                        aaTAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGAc                                                    <  1:2356425/91‑1 (MQ=255)

                                        aaTAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGAc                                                    >  2:1330167/1‑91 (MQ=255)

                                           aGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTa                                                 >  2:2204692/1‑91 (MQ=255)

                                            gTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTaa                                                >  1:2236778/1‑91 (MQ=255)

                                              ttcaaaaataacagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAata                                              >  2:854602‑M2/45‑91 (MQ=255)

                                              tAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAata                                              <  2:1061870/91‑1 (MQ=255)

                                              tAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAata                                              >  2:3087701/1‑91 (MQ=255)

                                                aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                            >  1:98809/1‑91 (MQ=255)

                                                aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                            <  2:2596947/91‑1 (MQ=255)

                                                 atatTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAttt                                           >  2:1067492/1‑91 (MQ=255)

                                                 atatTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAttt                                           >  1:1227675/1‑91 (MQ=255)

                                                    tttAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTaaa                                        >  2:521876/1‑91 (MQ=255)

                                                    tttAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTaaa                                        >  2:3517093/1‑91 (MQ=255)

                                                     ttAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAAt                                       >  2:1273806/1‑91 (MQ=255)

                                                      TAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAAtt                                      <  1:76076‑M1/91‑1 (MQ=255)

                                                       AACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTg                                     >  1:1051700‑M1/1‑91 (MQ=255)

                                                        ACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGa                                    >  2:943426‑M1/1‑91 (MQ=255)

                                                         CAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGaa                                   >  2:3200949‑M1/1‑91 (MQ=255)

                                                         CAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGaa                                   >  1:630915‑M1/1‑91 (MQ=255)

                                                          agccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAc                                  >  2:389616‑M2/33‑91 (MQ=255)

                                                          AGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAc                                  >  2:1854284‑M1/1‑91 (MQ=255)

                                                          AGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAc                                  >  1:2865441‑M1/1‑91 (MQ=255)

                                                          AGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAc                                  >  1:494706‑M1/1‑91 (MQ=255)

                                                           gccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                                 >  2:3879071‑M2/32‑91 (MQ=255)

                                                           gccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                                 >  2:1536730‑M2/32‑91 (MQ=255)

                                                           gccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                                 >  1:3590853‑M2/32‑91 (MQ=255)

                                                            ccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                                >  1:948225‑M2/31‑91 (MQ=255)

                                                            ccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                                >  2:2654879‑M2/31‑91 (MQ=255)

                                                            ccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                                >  1:43576‑M2/31‑91 (MQ=255)

                                                            ccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCT‑ATATTTAAATTGAAcatc                               >  2:791686‑M2/31‑91 (MQ=255)

                                                            CCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                                <  1:722847‑M1/91‑1 (MQ=255)

                                                              CCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatca                              >  1:1445670‑M1/1‑91 (MQ=255)

                                                              CCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatca                              >  2:527474‑M1/1‑91 (MQ=255)

                                                               CTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatcat                             >  2:2415248‑M1/1‑91 (MQ=255)

                                                                tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatt                            >  2:2398260/1‑91 (MQ=255)

                                                                  tCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                          >  2:2379279/1‑91 (MQ=255)

                                                                  acgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                          >  2:333252‑M2/25‑91 (MQ=255)

                                                                  acgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                          >  1:1401149‑M2/25‑91 (MQ=255)

                                                                  acgataacttgaaaggggctgttaTTTTTGAAAGTATACATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                          >  1:3271568‑M2/25‑91 (MQ=255)

                                                                    aaGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaat                        >  2:691870/1‑91 (MQ=255)

                                                                     aGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatt                       >  2:2250694/1‑91 (MQ=255)

                                                                     aGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatt                       >  2:162008/1‑91 (MQ=255)

                                                                      gTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatta                      <  1:1187295/91‑1 (MQ=255)

                                                                      gTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatta                      >  1:1643302/1‑91 (MQ=255)

                                                                        acttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCAttaaattaaa                    >  2:2539422‑M2/19‑91 (MQ=255)

                                                                         aTCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTaaaa                   >  2:455976/1‑91 (MQ=255)

                                                                           cGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGt                 >  2:1699681/1‑91 (MQ=255)

                                                                                   gctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatat         <  1:3313946‑M2/84‑1 (MQ=255)

                                                                                   gctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatat         <  2:926053‑M2/84‑1 (MQ=255)

                                                                                    ctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTACATTGAACATCATTAAATTAAAAGTAatgatatg        >  1:3452047‑M2/7‑91 (MQ=255)

                                                                                     tgttaTTTTTGAAAGTATCCATAAAAAGCATACATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatga       >  2:3805218‑M2/6‑91 (MQ=255)

                                                                                     tgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatga       >  1:1553782‑M2/6‑91 (MQ=255)

                                                                                          tttttGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGaa  >  2:3757304/1‑91 (MQ=255)

                                                                                          tttttGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGaa  <  1:2684545/91‑1 (MQ=255)

                                                                                          tttttGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGaa  >  2:3488023/1‑91 (MQ=255)

                                                                                          tttttGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGaa  >  1:1039823/1‑91 (MQ=255)

                                                                                          tttttGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGaa  >  1:978627/1‑91 (MQ=255)

AAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGAA  >  USA300TCH1516_ALE/646602‑646782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.